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Items: 1 to 20 of 25


Metacoder: An R package for visualization and manipulation of community taxonomic diversity data.

Foster ZS, Sharpton TJ, Gr├╝nwald NJ.

PLoS Comput Biol. 2017 Feb 21;13(2):e1005404. doi: 10.1371/journal.pcbi.1005404. eCollection 2017 Feb.


Increasing dietary nitrate has no effect on cancellous bone loss or fecal microbiome in ovariectomized rats.

Conley MN, Roberts C, Sharpton TJ, Iwaniec UT, Hord NG.

Mol Nutr Food Res. 2017 May;61(5). doi: 10.1002/mnfr.201600372. Epub 2017 Mar 30.


Triclosan Exposure Is Associated with Rapid Restructuring of the Microbiome in Adult Zebrafish.

Gaulke CA, Barton CL, Proffitt S, Tanguay RL, Sharpton TJ.

PLoS One. 2016 May 18;11(5):e0154632. doi: 10.1371/journal.pone.0154632. eCollection 2016.


Aging and serum MCP-1 are associated with gut microbiome composition in a murine model.

Conley MN, Wong CP, Duyck KM, Hord N, Ho E, Sharpton TJ.

PeerJ. 2016 Mar 31;4:e1854. doi: 10.7717/peerj.1854. eCollection 2016.


Effects of Subclinical Mycobacterium chelonae Infections on Fecundity and Embryo Survival in Zebrafish.

Kent ML, Watral VG, Kirchoff NS, Spagnoli ST, Sharpton TJ.

Zebrafish. 2016 Jul;13 Suppl 1:S88-95. doi: 10.1089/zeb.2015.1204. Epub 2016 Mar 31.


Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.

Nayfach S, Bradley PH, Wyman SK, Laurent TJ, Williams A, Eisen JA, Pollard KS, Sharpton TJ.

PLoS Comput Biol. 2015 Nov 13;11(11):e1004573. doi: 10.1371/journal.pcbi.1004573. eCollection 2015 Nov.


Modeling the Context-Dependent Associations between the Gut Microbiome, Its Environment, and Host Health.

Sharpton TJ, Gaulke CA.

MBio. 2015 Sep 8;6(5):e01367-15. doi: 10.1128/mBio.01367-15.


Backbones of evolutionary history test biodiversity theory for microbes.

O'Dwyer JP, Kembel SW, Sharpton TJ.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8356-61. doi: 10.1073/pnas.1419341112. Epub 2015 Jun 23. Erratum in: Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):E6589.


Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome.

Quandt CA, Kohler A, Hesse CN, Sharpton TJ, Martin F, Spatafora JW.

Environ Microbiol. 2015 Aug;17(8):2952-68. doi: 10.1111/1462-2920.12840. Epub 2015 Apr 22.


Profile hidden Markov models for the detection of viruses within metagenomic sequence data.

Skewes-Cox P, Sharpton TJ, Pollard KS, DeRisi JL.

PLoS One. 2014 Aug 20;9(8):e105067. doi: 10.1371/journal.pone.0105067. eCollection 2014.


An introduction to the analysis of shotgun metagenomic data.

Sharpton TJ.

Front Plant Sci. 2014 Jun 16;5:209. doi: 10.3389/fpls.2014.00209. eCollection 2014. Review.


Post-mortem sporulation of Ceratomyxa shasta (Myxozoa) after death in adult Chinook salmon.

Kent ML, Soderlund K, Thomann E, Schreck CB, Sharpton TJ.

J Parasitol. 2014 Oct;100(5):679-83. doi: 10.1645/13-490.1. Epub 2014 Apr 11.


Exome capture from saliva produces high quality genomic and metagenomic data.

Kidd JM, Sharpton TJ, Bobo D, Norman PJ, Martin AR, Carpenter ML, Sikora M, Gignoux CR, Nemat-Gorgani N, Adams A, Guadalupe M, Guo X, Feng Q, Li Y, Liu X, Parham P, Hoal EG, Feldman MW, Pollard KS, Wall JD, Bustamante CD, Henn BM.

BMC Genomics. 2014 Apr 4;15:262. doi: 10.1186/1471-2164-15-262.


A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter.

Finucane MM, Sharpton TJ, Laurent TJ, Pollard KS.

PLoS One. 2014 Jan 8;9(1):e84689. doi: 10.1371/journal.pone.0084689. eCollection 2014.


Global marine bacterial diversity peaks at high latitudes in winter.

Ladau J, Sharpton TJ, Finucane MM, Jospin G, Kembel SW, O'Dwyer J, Koeppel AF, Green JL, Pollard KS.

ISME J. 2013 Sep;7(9):1669-77. doi: 10.1038/ismej.2013.37. Epub 2013 Mar 21. Erratum in: ISME J.2013 Sep;7(9)1876.


Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource.

Sharpton TJ, Jospin G, Wu D, Langille MG, Pollard KS, Eisen JA.

BMC Bioinformatics. 2012 Oct 13;13:264. doi: 10.1186/1471-2105-13-264.


Comparative transcriptomics of the saprobic and parasitic growth phases in Coccidioides spp.

Whiston E, Zhang Wise H, Sharpton TJ, Jui G, Cole GT, Taylor JW.

PLoS One. 2012;7(7):e41034. doi: 10.1371/journal.pone.0041034. Epub 2012 Jul 20.


Novel bacterial taxa in the human microbiome.

Wylie KM, Truty RM, Sharpton TJ, Mihindukulasuriya KA, Zhou Y, Gao H, Sodergren E, Weinstock GM, Pollard KS.

PLoS One. 2012;7(6):e35294. doi: 10.1371/journal.pone.0035294. Epub 2012 Jun 13.


A framework for human microbiome research.

Human Microbiome Project Consortium.

Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209.


Structure, function and diversity of the healthy human microbiome.

Human Microbiome Project Consortium.

Nature. 2012 Jun 13;486(7402):207-14. doi: 10.1038/nature11234.

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