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Items: 1 to 20 of 52

1.

The pangenome of an agronomically important crop plant Brassica oleracea.

Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CK, Severn-Ellis A, McCombie WR, Parkin IA, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, Town CD, Batley J, Edwards D.

Nat Commun. 2016 Nov 11;7:13390. doi: 10.1038/ncomms13390.

2.

The developmental transcriptome atlas of the biofuel crop Camelina sativa.

Kagale S, Nixon J, Khedikar Y, Pasha A, Provart NJ, Clarke WE, Bollina V, Robinson SJ, Coutu C, Hegedus DD, Sharpe AG, Parkin IA.

Plant J. 2016 Aug 11. doi: 10.1111/tpj.13302. [Epub ahead of print]

PMID:
27513981
3.

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome.

Clarke WE, Higgins EE, Plieske J, Wieseke R, Sidebottom C, Khedikar Y, Batley J, Edwards D, Meng J, Li R, Lawley CT, Pauquet J, Laga B, Cheung W, Iniguez-Luy F, Dyrszka E, Rae S, Stich B, Snowdon RJ, Sharpe AG, Ganal MW, Parkin IA.

Theor Appl Genet. 2016 Oct;129(10):1887-99. doi: 10.1007/s00122-016-2746-7.

4.

A saturated SNP linkage map for the orange wheat blossom midge resistance gene Sm1.

Kassa MT, Haas S, Schliephake E, Lewis C, You FM, Pozniak CJ, Krämer I, Perovic D, Sharpe AG, Fobert PR, Koch M, Wise IL, Fenwick P, Berry S, Simmonds J, Hourcade D, Senellart P, Duchalais L, Robert O, Förster J, Thomas JB, Friedt W, Ordon F, Uauy C, McCartney CA.

Theor Appl Genet. 2016 Aug;129(8):1507-17. doi: 10.1007/s00122-016-2720-4.

PMID:
27160855
5.

Gene-based SNP discovery in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris) for diversity analysis and comparative mapping.

Gujaria-Verma N, Ramsay L, Sharpe AG, Sanderson LA, Debouck DG, Tar'an B, Bett KE.

BMC Genomics. 2016 Mar 15;17:239. doi: 10.1186/s12864-016-2499-3.

6.

Analysis of Genotyping-by-Sequencing (GBS) Data.

Kagale S, Koh C, Clarke WE, Bollina V, Parkin IA, Sharpe AG.

Methods Mol Biol. 2016;1374:269-84. doi: 10.1007/978-1-4939-3167-5_15.

PMID:
26519412
7.

A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes.

Jordan KW, Wang S, Lun Y, Gardiner LJ, MacLachlan R, Hucl P, Wiebe K, Wong D, Forrest KL; IWGS Consortium., Sharpe AG, Sidebottom CH, Hall N, Toomajian C, Close T, Dubcovsky J, Akhunova A, Talbert L, Bansal UK, Bariana HS, Hayden MJ, Pozniak C, Jeddeloh JA, Hall A, Akhunov E.

Genome Biol. 2015 Feb 26;16:48. doi: 10.1186/s13059-015-0606-4.

8.

Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly.

Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar'an B.

BMC Genomics. 2014 Aug 23;15:708. doi: 10.1186/1471-2164-15-708.

9.

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P.

Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435.

10.

Gene-based SNP discovery and genetic mapping in pea.

Sindhu A, Ramsay L, Sanderson LA, Stonehouse R, Li R, Condie J, Shunmugam AS, Liu Y, Jha AB, Diapari M, Burstin J, Aubert G, Tar'an B, Bett KE, Warkentin TD, Sharpe AG.

Theor Appl Genet. 2014 Oct;127(10):2225-41. doi: 10.1007/s00122-014-2375-y.

11.

High-density single nucleotide polymorphism (SNP) array mapping in Brassica oleracea: identification of QTL associated with carotenoid variation in broccoli florets.

Brown AF, Yousef GG, Chebrolu KK, Byrd RW, Everhart KW, Thomas A, Reid RW, Parkin IA, Sharpe AG, Oliver R, Guzman I, Jackson EW.

Theor Appl Genet. 2014 Sep;127(9):2051-64. doi: 10.1007/s00122-014-2360-5.

PMID:
25119868
12.

Polyploid evolution of the Brassicaceae during the Cenozoic era.

Kagale S, Robinson SJ, Nixon J, Xiao R, Huebert T, Condie J, Kessler D, Clarke WE, Edger PP, Links MG, Sharpe AG, Parkin IA.

Plant Cell. 2014 Jul;26(7):2777-91. doi: 10.1105/tpc.114.126391.

13.

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.

Parkin IA, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Pires JC, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B, Sharpe AG.

Genome Biol. 2014 Jun 10;15(6):R77. doi: 10.1186/gb-2014-15-6-r77.

14.

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes.

Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IA, Zhao M, Ma J, Yu J, Huang S, Wang X, Wang J, Lu K, Fang Z, Bancroft I, Yang TJ, Hu Q, Wang X, Yue Z, Li H, Yang L, Wu J, Zhou Q, Wang W, King GJ, Pires JC, Lu C, Wu Z, Sampath P, Wang Z, Guo H, Pan S, Yang L, Min J, Zhang D, Jin D, Li W, Belcram H, Tu J, Guan M, Qi C, Du D, Li J, Jiang L, Batley J, Sharpe AG, Park BS, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong C, Wang L, Li J, Hu Z, Zhuang M, Huang Y, Huang J, Shi J, Mei D, Liu J, Lee TH, Wang J, Jin H, Li Z, Li X, Zhang J, Xiao L, Zhou Y, Liu Z, Liu X, Qin R, Tang X, Liu W, Wang Y, Zhang Y, Lee J, Kim HH, Denoeud F, Xu X, Liang X, Hua W, Wang X, Wang J, Chalhoub B, Paterson AH.

Nat Commun. 2014 May 23;5:3930. doi: 10.1038/ncomms4930.

15.

The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure.

Kagale S, Koh C, Nixon J, Bollina V, Clarke WE, Tuteja R, Spillane C, Robinson SJ, Links MG, Clarke C, Higgins EE, Huebert T, Sharpe AG, Parkin IA.

Nat Commun. 2014 Apr 23;5:3706. doi: 10.1038/ncomms4706.

16.

Comparison of five major trichome regulatory genes in Brassica villosa with orthologues within the Brassicaceae.

Nayidu NK, Kagale S, Taheri A, Withana-Gamage TS, Parkin IA, Sharpe AG, Gruber MY.

PLoS One. 2014 Apr 22;9(4):e95877. doi: 10.1371/journal.pone.0095877.

17.

Comprehensive transcriptome assembly of Chickpea (Cicer arietinum L.) using sanger and next generation sequencing platforms: development and applications.

Kudapa H, Azam S, Sharpe AG, Taran B, Li R, Deonovic B, Cameron C, Farmer AD, Cannon SB, Varshney RK.

PLoS One. 2014 Jan 23;9(1):e86039. doi: 10.1371/journal.pone.0086039.

18.

A mutant Brassica napus (canola) population for the identification of new genetic diversity via TILLING and next generation sequencing.

Gilchrist EJ, Sidebottom CH, Koh CS, Macinnes T, Sharpe AG, Haughn GW.

PLoS One. 2013 Dec 20;8(12):e84303. doi: 10.1371/journal.pone.0084303.

19.

Genomic DNA enrichment using sequence capture microarrays: a novel approach to discover sequence nucleotide polymorphisms (SNP) in Brassica napus L.

Clarke WE, Parkin IA, Gajardo HA, Gerhardt DJ, Higgins E, Sidebottom C, Sharpe AG, Snowdon RJ, Federico ML, Iniguez-Luy FL.

PLoS One. 2013 Dec 3;8(12):e81992. doi: 10.1371/journal.pone.0081992.

20.

A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits.

Raman H, Raman R, Kilian A, Detering F, Long Y, Edwards D, Parkin IA, Sharpe AG, Nelson MN, Larkan N, Zou J, Meng J, Aslam MN, Batley J, Cowling WA, Lydiate D.

BMC Genomics. 2013 Apr 23;14:277. doi: 10.1186/1471-2164-14-277.

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