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Items: 10

1.

TSSPlant: a new tool for prediction of plant Pol II promoters.

Shahmuradov IA, Umarov RK, Solovyev VV.

Nucleic Acids Res. 2017 May 5;45(8):e65. doi: 10.1093/nar/gkw1353.

2.

bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli.

Shahmuradov IA, Mohamad Razali R, Bougouffa S, Radovanovic A, Bajic VB.

Bioinformatics. 2017 Feb 1;33(3):334-340. doi: 10.1093/bioinformatics/btw629.

3.

Nsite, NsiteH and NsiteM computer tools for studying transcription regulatory elements.

Shahmuradov IA, Solovyev VV.

Bioinformatics. 2015 Nov 1;31(21):3544-5. doi: 10.1093/bioinformatics/btv404. Epub 2015 Jul 2.

4.

POLYAR, a new computer program for prediction of poly(A) sites in human sequences.

Akhtar MN, Bukhari SA, Fazal Z, Qamar R, Shahmuradov IA.

BMC Genomics. 2010 Nov 19;11:646. doi: 10.1186/1471-2164-11-646.

5.

Identification of promoter regions and regulatory sites.

Solovyev VV, Shahmuradov IA, Salamov AA.

Methods Mol Biol. 2010;674:57-83. doi: 10.1007/978-1-60761-854-6_5.

PMID:
20827586
6.

Plant promoter prediction with confidence estimation.

Shahmuradov IA, Solovyev VV, Gammerman AJ.

Nucleic Acids Res. 2005 Feb 18;33(3):1069-76. Print 2005.

7.

Abundance of plastid DNA insertions in nuclear genomes of rice and Arabidopsis.

Shahmuradov IA, Akbarova YY, Solovyev VV, Aliyev JA.

Plant Mol Biol. 2003 Jul;52(5):923-34.

PMID:
14558655
8.

Sequence alignment kernel for recognition of promoter regions.

Gordon L, Chervonenkis AY, Gammerman AJ, Shahmuradov IA, Solovyev VV.

Bioinformatics. 2003 Oct 12;19(15):1964-71.

PMID:
14555630
9.

PromH: Promoters identification using orthologous genomic sequences.

Solovyev VV, Shahmuradov IA.

Nucleic Acids Res. 2003 Jul 1;31(13):3540-5.

10.

PlantProm: a database of plant promoter sequences.

Shahmuradov IA, Gammerman AJ, Hancock JM, Bramley PM, Solovyev VV.

Nucleic Acids Res. 2003 Jan 1;31(1):114-7.

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