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Items: 1 to 20 of 29


Small RNAs from a Big Genome: The piRNA Pathway and Transposable Elements in the Salamander Species Desmognathus fuscus.

Madison-Villar MJ, Sun C, Lau NC, Settles ML, Mueller RL.

J Mol Evol. 2016 Oct 14.


A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae).

Uribe-Convers S, Settles ML, Tank DC.

PLoS One. 2016 Feb 1;11(2):e0148203. doi: 10.1371/journal.pone.0148203. eCollection 2016.


Full Mitochondrial Genome Sequence of the Sugar Beet Wireworm Limonius californicus (Coleoptera: Elateridae), a Common Agricultural Pest.

Gerritsen AT, New DD, Robison BD, Rashed A, Hohenlohe P, Forney L, Rashidi M, Wilson CM, Settles ML.

Genome Announc. 2016 Jan 21;4(1). pii: e01628-15. doi: 10.1128/genomeA.01628-15.


Mitochondrial Genome Sequence of the Galápagos Endemic Land Snail Naesiotus nux.

Hunter SS, Settles ML, New DD, Parent CE, Gerritsen AT.

Genome Announc. 2016 Jan 21;4(1). pii: e01362-15. doi: 10.1128/genomeA.01362-15.


Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance.

Loftie-Eaton W, Yano H, Burleigh S, Simmons RS, Hughes JM, Rogers LM, Hunter SS, Settles ML, Forney LJ, Ponciano JM, Top EM.

Mol Biol Evol. 2016 Apr;33(4):885-97. doi: 10.1093/molbev/msv339. Epub 2015 Dec 14.


The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards.

Laurent S, Pfeifer SP, Settles ML, Hunter SS, Hardwick KM, Ormond L, Sousa VC, Jensen JD, Rosenblum EB.

Mol Ecol. 2016 Jan;25(1):306-23. doi: 10.1111/mec.13385. Epub 2015 Oct 30.


Fecal Microbial Community Structure Is Stable over Time and Related to Variation in Macronutrient and Micronutrient Intakes in Lactating Women.

Carrothers JM, York MA, Brooker SL, Lackey KA, Williams JE, Shafii B, Price WJ, Settles ML, McGuire MA, McGuire MK.

J Nutr. 2015 Oct;145(10):2379-88. doi: 10.3945/jn.115.211110. Epub 2015 Aug 26.


Draft Genome Sequence of Pseudomonas sp. nov. H2.

Loftie-Eaton W, Suzuki H, Bashford K, Heuer H, Stragier P, De Vos P, Settles ML, Top EM.

Genome Announc. 2015 Apr 2;3(2). pii: e00241-15. doi: 10.1128/genomeA.00241-15.


Vaginal microbiota of adolescent girls prior to the onset of menarche resemble those of reproductive-age women.

Hickey RJ, Zhou X, Settles ML, Erb J, Malone K, Hansmann MA, Shew ML, Van Der Pol B, Fortenberry JD, Forney LJ.

MBio. 2015 Mar 24;6(2). pii: e00097-15. doi: 10.1128/mBio.00097-15.


Fine-scale analysis of 16S rRNA sequences reveals a high level of taxonomic diversity among vaginal Atopobium spp.

Mendes-Soares H, Krishnan V, Settles ML, Ravel J, Brown CJ, Forney LJ.

Pathog Dis. 2015 Jun;73(4). pii: ftv020. doi: 10.1093/femspd/ftv020. Epub 2015 Mar 15.


Comparative analysis of microbial community of novel lactic acid fermentation inoculated with different undefined mixed cultures.

Liang S, Gliniewicz K, Mendes-Soares H, Settles ML, Forney LJ, Coats ER, McDonald AG.

Bioresour Technol. 2015 Mar;179:268-74. doi: 10.1016/j.biortech.2014.12.032. Epub 2014 Dec 17.


Influence of organic loading rate and solid retention time on polyhydroxybutyrate production from hybrid poplar hydrolysates using mixed microbial cultures.

Dai J, Gliniewicz K, Settles ML, Coats ER, McDonald AG.

Bioresour Technol. 2015 Jan;175:23-33. doi: 10.1016/j.biortech.2014.10.049. Epub 2014 Oct 17.


Prenatal exposure to BPA alters the epigenome of the rat mammary gland and increases the propensity to neoplastic development.

Dhimolea E, Wadia PR, Murray TJ, Settles ML, Treitman JD, Sonnenschein C, Shioda T, Soto AM.

PLoS One. 2014 Jul 2;9(7):e99800. doi: 10.1371/journal.pone.0099800. eCollection 2014.


Vaginal microbiome changes with levonorgestrel intrauterine system placement.

Jacobson JC, Turok DK, Dermish AI, Nygaard IE, Settles ML.

Contraception. 2014 Aug;90(2):130-5. doi: 10.1016/j.contraception.2014.04.006. Epub 2014 Apr 21.


Maternal bisphenol a exposure impacts the fetal heart transcriptome.

Chapalamadugu KC, Vandevoort CA, Settles ML, Robison BD, Murdoch GK.

PLoS One. 2014 Feb 25;9(2):e89096. doi: 10.1371/journal.pone.0089096. eCollection 2014.


Draft Genome Sequence of Pseudomonas moraviensis R28-S.

Hunter SS, Yano H, Loftie-Eaton W, Hughes J, De Gelder L, Stragier P, De Vos P, Settles ML, Top EM.

Genome Announc. 2014 Feb 20;2(1). pii: e00035-14. doi: 10.1128/genomeA.00035-14.


SlopMap: a software application tool for quick and flexible identification of similar sequences using exact k-mer matching.

Zhbannikov IY, Hunter SS, Settles ML, Foster JA.

J Data Mining Genomics Proteomics. 2013 Aug 1;4(3). doi: 10.4172/2153-0602.1000133.


Microbiota of the seminal fluid from healthy and infertile men.

Hou D, Zhou X, Zhong X, Settles ML, Herring J, Wang L, Abdo Z, Forney LJ, Xu C.

Fertil Steril. 2013 Nov;100(5):1261-9. doi: 10.1016/j.fertnstert.2013.07.1991. Epub 2013 Aug 29.


Sex-specific transcriptional responses of the zebrafish (Danio rerio) brain selenoproteome to acute sodium selenite supplementation.

Benner MJ, Settles ML, Murdoch GK, Hardy RW, Robison BD.

Physiol Genomics. 2013 Aug 1;45(15):653-66. doi: 10.1152/physiolgenomics.00030.2013. Epub 2013 Jun 4.


An improved algorithm for the detection of genomic variation using short oligonucleotide expression microarrays.

Settles ML, Coram T, Soule T, Robison BD.

Mol Ecol Resour. 2012 Nov;12(6):1079-89. doi: 10.1111/1755-0998.12006. Epub 2012 Sep 12.

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