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A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation.

Anderson WD, DeCicco D, Schwaber JS, Vadigepalli R.

PLoS Comput Biol. 2017 Jul 21;13(7):e1005627. doi: 10.1371/journal.pcbi.1005627. eCollection 2017 Jul.


Single-Cell Transcriptional Analysis Reveals Novel Neuronal Phenotypes and Interaction Networks Involved in the Central Circadian Clock.

Park J, Zhu H, O'Sullivan S, Ogunnaike BA, Weaver DR, Schwaber JS, Vadigepalli R.

Front Neurosci. 2016 Oct 25;10:481. eCollection 2016.


Systemic leukotriene B4 receptor antagonism lowers arterial blood pressure and improves autonomic function in the spontaneously hypertensive rat.

Marvar PJ, Hendy EB, Cruise TD, Walas D, DeCicco D, Vadigepalli R, Schwaber JS, Waki H, Murphy D, Paton JF.

J Physiol. 2016 Oct 15;594(20):5975-5989. doi: 10.1113/JP272065. Epub 2016 Jul 8.


Intracellular Information Processing through Encoding and Decoding of Dynamic Signaling Features.

Makadia HK, Schwaber JS, Vadigepalli R.

PLoS Comput Biol. 2015 Oct 22;11(10):e1004563. doi: 10.1371/journal.pcbi.1004563. eCollection 2015 Oct.


Computational modeling of cytokine signaling in microglia.

Anderson WD, Makadia HK, Greenhalgh AD, Schwaber JS, David S, Vadigepalli R.

Mol Biosyst. 2015 Dec;11(12):3332-46. doi: 10.1039/c5mb00488h.


MicroRNA network changes in the brain stem underlie the development of hypertension.

DeCicco D, Zhu H, Brureau A, Schwaber JS, Vadigepalli R.

Physiol Genomics. 2015 Sep;47(9):388-99. doi: 10.1152/physiolgenomics.00047.2015. Epub 2015 Jun 30.


Multiscale model of dynamic neuromodulation integrating neuropeptide-induced signaling pathway activity with membrane electrophysiology.

Makadia HK, Anderson WD, Fey D, Sauter T, Schwaber JS, Vadigepalli R.

Biophys J. 2015 Jan 6;108(1):211-23. doi: 10.1016/j.bpj.2014.11.1851.


Coordinated dynamic gene expression changes in the central nucleus of the amygdala during alcohol withdrawal.

Freeman K, Staehle MM, Vadigepalli R, Gonye GE, Ogunnaike BA, Hoek JB, Schwaber JS.

Alcohol Clin Exp Res. 2013 Jan;37 Suppl 1:E88-100. doi: 10.1111/j.1530-0277.2012.01910.x. Epub 2012 Jul 24.


Integrative gene regulatory network analysis reveals light-induced regional gene expression phase shift programs in the mouse suprachiasmatic nucleus.

Zhu H, Vadigepalli R, Rafferty R, Gonye GE, Weaver DR, Schwaber JS.

PLoS One. 2012;7(5):e37833. doi: 10.1371/journal.pone.0037833. Epub 2012 May 25.


Temporal changes in innate immune signals in a rat model of alcohol withdrawal in emotional and cardiorespiratory homeostatic nuclei.

Freeman K, Brureau A, Vadigepalli R, Staehle MM, Brureau MM, Gonye GE, Hoek JB, Hooper DC, Schwaber JS.

J Neuroinflammation. 2012 May 24;9:97. doi: 10.1186/1742-2094-9-97.


The neuroscience-systems biology disconnect: towards the NeuroPhysiome.

Morris KF, Schwaber JS.

Exp Physiol. 2012 Apr;97(4):452-4. doi: 10.1113/expphysiol.2011.058297. No abstract available.


Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance.

Freeman K, Staehle MM, Gümüş ZH, Vadigepalli R, Gonye GE, Nichols CN, Ogunnaike BA, Hoek JB, Schwaber JS.

Alcohol Clin Exp Res. 2012 Oct;36(10):1688-700. doi: 10.1111/j.1530-0277.2012.01791.x. Epub 2012 Apr 6.


Adaptive transcriptional dynamics of A2 neurons and central cardiovascular control pathways.

Vadigepalli R, Gonye GE, Paton JF, Schwaber JS.

Exp Physiol. 2012 Apr;97(4):462-8. doi: 10.1113/expphysiol.2011.059790. Epub 2011 Oct 14. Review.


Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network.

Miller GM, Ogunnaike BA, Schwaber JS, Vadigepalli R.

BMC Syst Biol. 2010 Dec 17;4:171. doi: 10.1186/1752-0509-4-171.


A fast carrier chromatin immunoprecipitation method applicable to microdissected tissue samples.

Hao H, Liu H, Gonye G, Schwaber JS.

J Neurosci Methods. 2008 Jul 15;172(1):38-42. doi: 10.1016/j.jneumeth.2008.04.002. Epub 2008 Apr 10.


Dynamic transcriptomic response to acute hypertension in the nucleus tractus solitarius.

Khan RL, Vadigepalli R, McDonald MK, Rogers RF, Gao GR, Schwaber JS.

Am J Physiol Regul Integr Comp Physiol. 2008 Jul;295(1):R15-27. doi: 10.1152/ajpregu.00152.2008. Epub 2008 Apr 23.


From promoter analysis to transcriptional regulatory network prediction using PAINT.

Gonye GE, Chakravarthula P, Schwaber JS, Vadigepalli R.

Methods Mol Biol. 2007;408:49-68. doi: 10.1007/978-1-59745-547-3_4.


Quantifying gene network connectivity in silico: scalability and accuracy of a modular approach.

Yalamanchili N, Zak DE, Ogunnaike BA, Schwaber JS, Kriete A, Kholodenko BN.

Syst Biol (Stevenage). 2006 Jul;153(4):236-46.


Epidermal growth factor receptor-induced circadian-time-dependent gene regulation in suprachiasmatic nucleus.

Vadigepalli R, Hao H, Miller GM, Liu H, Schwaber JS.

Neuroreport. 2006 Sep 18;17(13):1437-41.


Systems analysis of circadian time-dependent neuronal epidermal growth factor receptor signaling.

Zak DE, Hao H, Vadigepalli R, Miller GM, Ogunnaike BA, Schwaber JS.

Genome Biol. 2006;7(6):R48.

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