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Items: 1 to 20 of 97

1.

Unbiased Bayesian inference for population Markov jump processes via random truncations.

Georgoulas A, Hillston J, Sanguinetti G.

Stat Comput. 2017;27(4):991-1002. doi: 10.1007/s11222-016-9667-9. Epub 2016 Jun 2.

2.

BRIE: transcriptome-wide splicing quantification in single cells.

Huang Y, Sanguinetti G.

Genome Biol. 2017 Jun 27;18(1):123. doi: 10.1186/s13059-017-1248-5.

3.

MeCP2 recognizes cytosine methylated tri-nucleotide and di-nucleotide sequences to tune transcription in the mammalian brain.

Lagger S, Connelly JC, Schweikert G, Webb S, Selfridge J, Ramsahoye BH, Yu M, He C, Sanguinetti G, Sowers LC, Walkinshaw MD, Bird A.

PLoS Genet. 2017 May 12;13(5):e1006793. doi: 10.1371/journal.pgen.1006793. eCollection 2017 May.

4.

Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress.

van Nues R, Schweikert G, de Leau E, Selega A, Langford A, Franklin R, Iosub I, Wadsworth P, Sanguinetti G, Granneman S.

Nat Commun. 2017 Apr 11;8(1):12. doi: 10.1038/s41467-017-00025-5.

5.

DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks.

Lukauskas S, Visintainer R, Sanguinetti G, Schweikert GB.

BMC Bioinformatics. 2016 Dec 13;17(Suppl 16):447. doi: 10.1186/s12859-016-1306-0.

6.

Trends and challenges in computational RNA biology.

Selega A, Sanguinetti G.

Genome Biol. 2016 Dec 7;17(1):253.

7.

Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.

Selega A, Sirocchi C, Iosub I, Granneman S, Sanguinetti G.

Nat Methods. 2017 Jan;14(1):83-89. doi: 10.1038/nmeth.4068. Epub 2016 Nov 7.

PMID:
27819660
8.

Higher order methylation features for clustering and prediction in epigenomic studies.

Kapourani CA, Sanguinetti G.

Bioinformatics. 2016 Sep 1;32(17):i405-i412. doi: 10.1093/bioinformatics/btw432.

PMID:
27587656
9.

Statistical modeling of isoform splicing dynamics from RNA-seq time series data.

Huang Y, Sanguinetti G.

Bioinformatics. 2016 Oct 1;32(19):2965-72. doi: 10.1093/bioinformatics/btw364. Epub 2016 Jun 17.

PMID:
27318208
10.

Strand-specific, high-resolution mapping of modified RNA polymerase II.

Milligan L, Huynh-Thu VA, Delan-Forino C, Tuck A, Petfalski E, Lombraña R, Sanguinetti G, Kudla G, Tollervey D.

Mol Syst Biol. 2016 Jun 10;12(6):874. doi: 10.15252/msb.20166869.

11.

Cox process representation and inference for stochastic reaction-diffusion processes.

Schnoerr D, Grima R, Sanguinetti G.

Nat Commun. 2016 May 25;7:11729. doi: 10.1038/ncomms11729.

12.

Network of epistatic interactions within a yeast snoRNA.

Puchta O, Cseke B, Czaja H, Tollervey D, Sanguinetti G, Kudla G.

Science. 2016 May 13;352(6287):840-4. doi: 10.1126/science.aaf0965. Epub 2016 Apr 14. Erratum in: Science. 2016 May 6;352(6286). pii: aaf9112. doi: 10.1126/science.aaf9112.

13.

In utero betamethasone affects 3β-hydroxysteroid dehydrogenase and inhibin-α immunoexpression during testis development.

Pedrana G, Viotti H, Lombide P, Sanguinetti G, Pino C, Cavestany D, Sloboda DM, Martin GB.

J Dev Orig Health Dis. 2016 Aug;7(4):342-9. doi: 10.1017/S2040174416000118. Epub 2016 Mar 29.

PMID:
27019950
14.

Carbon Monoxide Gas Is Not Inert, but Global, in Its Consequences for Bacterial Gene Expression, Iron Acquisition, and Antibiotic Resistance.

Wareham LK, Begg R, Jesse HE, Van Beilen JW, Ali S, Svistunenko D, McLean S, Hellingwerf KJ, Sanguinetti G, Poole RK.

Antioxid Redox Signal. 2016 Jun 10;24(17):1013-28. doi: 10.1089/ars.2015.6501. Epub 2016 Mar 30.

15.

CydDC-mediated reductant export in Escherichia coli controls the transcriptional wiring of energy metabolism and combats nitrosative stress.

Holyoake LV, Hunt S, Sanguinetti G, Cook GM, Howard MJ, Rowe ML, Poole RK, Shepherd M.

Biochem J. 2016 Mar 15;473(6):693-701. doi: 10.1042/BJ20150536. Epub 2015 Dec 23.

16.

Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling.

Barrass JD, Reid JE, Huang Y, Hector RD, Sanguinetti G, Beggs JD, Granneman S.

Genome Biol. 2015 Dec 17;16:282. doi: 10.1186/s13059-015-0848-1.

17.

Comparison of different moment-closure approximations for stochastic chemical kinetics.

Schnoerr D, Sanguinetti G, Grima R.

J Chem Phys. 2015 Nov 14;143(18):185101. doi: 10.1063/1.4934990.

PMID:
26567686
18.

Improving Fiber Alignment in HARDI by Combining Contextual PDE Flow with Constrained Spherical Deconvolution.

Portegies JM, Fick RH, Sanguinetti GR, Meesters SP, Girard G, Duits R.

PLoS One. 2015 Oct 14;10(10):e0138122. doi: 10.1371/journal.pone.0138122. eCollection 2015.

19.

Analysis of transcript changes in a heme-deficient mutant of Escherichia coli in response to CORM-3 [Ru(CO)3Cl(glycinate)].

Wilson JL, McLean S, Begg R, Sanguinetti G, Poole RK.

Genom Data. 2015 Jun 13;5:231-234. eCollection 2015 Sep.

20.

RiboAbacus: a model trained on polyribosome images predicts ribosome density and translational efficiency from mammalian transcriptomes.

Lauria F, Tebaldi T, Lunelli L, Struffi P, Gatto P, Pugliese A, Brigotti M, Montanaro L, Ciribilli Y, Inga A, Quattrone A, Sanguinetti G, Viero G.

Nucleic Acids Res. 2015 Dec 15;43(22):e153. doi: 10.1093/nar/gkv781. Epub 2015 Aug 3.

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