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Items: 1 to 20 of 75

1.

Toward achieving harmonization in a nano-cytotoxicity assay measurement through an interlaboratory comparison study.

Elliott JT, Rösslein M, Song NW, Toman B, Kinsner-Ovaskainen A, Maniratanachote R, Salit ML, Petersen EJ, Sequeira F, Romsos EL, Kim SJ, Lee J, Von Moos NR, Rossi F, Hirsch C, Krug HF, Suchaoin W, Wick P.

ALTEX. 2016 Sep 29. doi: 10.14573/altex.1605021. [Epub ahead of print]

2.

Development and Characterization of Reference Materials for Genetic Testing: Focus on Public Partnerships.

Kalman LV, Datta V, Williams M, Zook JM, Salit ML, Han JY.

Ann Lab Med. 2016 Nov;36(6):513-20. doi: 10.3343/alm.2016.36.6.513. Review.

3.

External RNA Controls Consortium Beta Version Update.

Lee H, Pine PS, McDaniel J, Salit M, Oliver B.

J Genomics. 2016 Jul 26;4:19-22. doi: 10.7150/jgen.16082.

4.

Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design.

Pine PS, Munro SA, Parsons JR, McDaniel J, Lucas AB, Lozach J, Myers TG, Su Q, Jacobs-Helber SM, Salit M.

BMC Biotechnol. 2016 Jun 24;16(1):54. doi: 10.1186/s12896-016-0281-x.

5.

An international comparability study on quantification of mRNA gene expression ratios: CCQM-P103.1.

Devonshire AS, Sanders R, Whale AS, Nixon GJ, Cowen S, Ellison SL, Parkes H, Pine PS, Salit M, McDaniel J, Munro S, Lund S, Matsukura S, Sekiguchi Y, Kawaharasaki M, Granjeiro JM, Falagan-Lotsch P, Saraiva AM, Couto P, Yang I, Kwon H, Park SR, Demšar T, Žel J, Blejec A, Milavec M, Dong L, Zhang L, Sui Z, Wang J, Viroonudomphol D, Prawettongsopon C, Partis L, Baoutina A, Emslie K, Takatsu A, Akyurek S, Akgoz M, Vonsky M, Konopelko LA, Cundapi EM, Urquiza MP, Huggett JF, Foy CA.

Biomol Detect Quantif. 2016 Jun 6;8:15-28. doi: 10.1016/j.bdq.2016.05.003.

6.

In Vivo Site-Specific Protein Tagging with Diverse Amines Using an Engineered Sortase Variant.

Glasgow JE, Salit ML, Cochran JR.

J Am Chem Soc. 2016 Jun 22;138(24):7496-9. doi: 10.1021/jacs.6b03836.

PMID:
27280683
7.

Extensive sequencing of seven human genomes to characterize benchmark reference materials.

Zook JM, Catoe D, McDaniel J, Vang L, Spies N, Sidow A, Weng Z, Liu Y, Mason CE, Alexander N, Henaff E, McIntyre AB, Chandramohan D, Chen F, Jaeger E, Moshrefi A, Pham K, Stedman W, Liang T, Saghbini M, Dzakula Z, Hastie A, Cao H, Deikus G, Schadt E, Sebra R, Bashir A, Truty RM, Chang CC, Gulbahce N, Zhao K, Ghosh S, Hyland F, Fu Y, Chaisson M, Xiao C, Trow J, Sherry ST, Zaranek AW, Ball M, Bobe J, Estep P, Church GM, Marks P, Kyriazopoulou-Panagiotopoulou S, Zheng GX, Schnall-Levin M, Ordonez HS, Mudivarti PA, Giorda K, Sheng Y, Rypdal KB, Salit M.

Sci Data. 2016 Jun 7;3:160025. doi: 10.1038/sdata.2016.25.

8.

When Wavelengths Collide: Bias in Cell Abundance Measurements Due to Expressed Fluorescent Proteins.

Hecht A, Endy D, Salit M, Munson MS.

ACS Synth Biol. 2016 Sep 16;5(9):1024-7. doi: 10.1021/acssynbio.6b00072.

9.

Advancing Benchmarks for Genome Sequencing.

Zook JM, Salit M.

Cell Syst. 2015 Sep 23;1(3):176-7. doi: 10.1016/j.cels.2015.09.004.

10.

A research roadmap for next-generation sequencing informatics.

Altman RB, Prabhu S, Sidow A, Zook JM, Goldfeder R, Litwack D, Ashley E, Asimenos G, Bustamante CD, Donigan K, Giacomini KM, Johansen E, Khuri N, Lee E, Liang XS, Salit M, Serang O, Tezak Z, Wall DP, Mansfield E, Kass-Hout T.

Sci Transl Med. 2016 Apr 20;8(335):335ps10. doi: 10.1126/scitranslmed.aaf7314. Review.

PMID:
27099173
11.

Evaluation of microbial qPCR workflows using engineered Saccharomyces cerevisiae.

Da Silva SM, Vang LK, Olson ND, Lund SP, Downey AS, Kelman Z, Salit ML, Lin NJ, Morrow JB.

Biomol Detect Quantif. 2016 Feb 19;7:27-33. doi: 10.1016/j.bdq.2016.01.001.

12.

PEPR: pipelines for evaluating prokaryotic references.

Olson ND, Zook JM, Samarov DV, Jackson SA, Salit ML.

Anal Bioanal Chem. 2016 Apr;408(11):2975-83. doi: 10.1007/s00216-015-9299-5.

13.

Medical implications of technical accuracy in genome sequencing.

Goldfeder RL, Priest JR, Zook JM, Grove ME, Waggott D, Wheeler MT, Salit M, Ashley EA.

Genome Med. 2016 Mar 2;8(1):24. doi: 10.1186/s13073-016-0269-0.

14.

svclassify: a method to establish benchmark structural variant calls.

Parikh H, Mohiyuddin M, Lam HY, Iyer H, Chen D, Pratt M, Bartha G, Spies N, Losert W, Zook JM, Salit M.

BMC Genomics. 2016 Jan 16;17:64. doi: 10.1186/s12864-016-2366-2.

15.

Unmet needs: Research helps regulators do their jobs.

Altman RB, Khuri N, Salit M, Giacomini KM.

Sci Transl Med. 2015 Nov 25;7(315):315ps22. doi: 10.1126/scitranslmed.aac4369. Review.

PMID:
26606966
16.

Minimum information for reporting next generation sequence genotyping (MIRING): Guidelines for reporting HLA and KIR genotyping via next generation sequencing.

Mack SJ, Milius RP, Gifford BD, Sauter J, Hofmann J, Osoegawa K, Robinson J, Groeneweg M, Turenchalk GS, Adai A, Holcomb C, Rozemuller EH, Penning MT, Heuer ML, Wang C, Salit ML, Schmidt AH, Parham PR, Müller C, Hague T, Fischer G, Fernandez-Viňa M, Hollenbach JA, Norman PJ, Maiers M.

Hum Immunol. 2015 Dec;76(12):954-62. doi: 10.1016/j.humimm.2015.09.011.

17.

Using mixtures of biological samples as process controls for RNA-sequencing experiments.

Parsons J, Munro S, Pine PS, McDaniel J, Mehaffey M, Salit M.

BMC Genomics. 2015 Sep 17;16:708. doi: 10.1186/s12864-015-1912-7.

18.

svviz: a read viewer for validating structural variants.

Spies N, Zook JM, Salit M, Sidow A.

Bioinformatics. 2015 Dec 15;31(24):3994-6. doi: 10.1093/bioinformatics/btv478.

PMID:
26286809
19.

Achieving high-sensitivity for clinical applications using augmented exome sequencing.

Patwardhan A, Harris J, Leng N, Bartha G, Church DM, Luo S, Haudenschild C, Pratt M, Zook J, Salit M, Tirch J, Morra M, Chervitz S, Li M, Clark M, Garcia S, Chandratillake G, Kirk S, Ashley E, Snyder M, Altman R, Bustamante C, Butte AJ, West J, Chen R.

Genome Med. 2015 Jul 16;7:71. doi: 10.1186/s13073-015-0197-4.

20.

Best practices for evaluating single nucleotide variant calling methods for microbial genomics.

Olson ND, Lund SP, Colman RE, Foster JT, Sahl JW, Schupp JM, Keim P, Morrow JB, Salit ML, Zook JM.

Front Genet. 2015 Jul 7;6:235. doi: 10.3389/fgene.2015.00235. Review.

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