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Items: 1 to 20 of 42

1.

Computational Analysis of G-Quadruplex Forming Sequences across Chromosomes Reveals High Density Patterns Near the Terminal Ends.

Chariker JH, Miller DM, Rouchka EC.

PLoS One. 2016 Oct 24;11(10):e0165101. doi: 10.1371/journal.pone.0165101.

2.

Discovery of a Family of Genomic Sequences Which Interact Specifically with the c-MYC Promoter to Regulate c-MYC Expression.

Rezzoug F, Thomas SD, Rouchka EC, Miller DM.

PLoS One. 2016 Aug 23;11(8):e0161588. doi: 10.1371/journal.pone.0161588.

3.

Nuclear respiratory factor-1 and bioenergetics in tamoxifen-resistant breast cancer cells.

Radde BN, Ivanova MM, Mai HX, Alizadeh-Rad N, Piell K, Van Hoose P, Cole MP, Muluhngwi P, Kalbfleisch TS, Rouchka EC, Hill BG, Klinge CM.

Exp Cell Res. 2016 Sep 10;347(1):222-31. doi: 10.1016/j.yexcr.2016.08.006.

PMID:
27515002
4.

Involvement of PARP1 in the regulation of alternative splicing.

Matveeva E, Maiorano J, Zhang Q, Eteleeb AM, Convertini P, Chen J, Infantino V, Stamm S, Wang J, Rouchka EC, Fondufe-Mittendorf YN.

Cell Discov. 2016 Feb 16;2:15046. doi: 10.1038/celldisc.2015.46.

5.

rMAPS: RNA map analysis and plotting server for alternative exon regulation.

Park JW, Jung S, Rouchka EC, Tseng YT, Xing Y.

Nucleic Acids Res. 2016 Jul 8;44(W1):W333-8. doi: 10.1093/nar/gkw410.

6.

Data set for transcriptional response to depletion of the Shoc2 scaffolding protein.

Rouchka EC, Jeoung M, Jang ER, Liu J, Wang C, Li X, Galperin E.

Data Brief. 2016 Mar 9;7:770-8. doi: 10.1016/j.dib.2016.03.012.

7.

The Adaptor Protein CD2AP Is a Coordinator of Neurotrophin Signaling-Mediated Axon Arbor Plasticity.

Harrison BJ, Venkat G, Lamb JL, Hutson TH, Drury C, Rau KK, Bunge MB, Mendell LM, Gage FH, Johnson RD, Hill CE, Rouchka EC, Moon LD, Petruska JC.

J Neurosci. 2016 Apr 13;36(15):4259-75. doi: 10.1523/JNEUROSCI.2423-15.2016.

8.

Transcriptional profile of immediate response to ionizing radiation exposure.

Rouchka EC, Flight RM, Fasciotto BH, Estrada R, Eaton JW, Patibandla PK, Waigel SJ, Li D, Kirtley JK, Sethu P, Keynton RS.

Genom Data. 2015 Dec 1;7:82-5. doi: 10.1016/j.gdata.2015.11.027.

9.

Shoc2-tranduced ERK1/2 motility signals--Novel insights from functional genomics.

Jeoung M, Jang ER, Liu J, Wang C, Rouchka EC, Li X, Galperin E.

Cell Signal. 2016 May;28(5):448-59. doi: 10.1016/j.cellsig.2016.02.005.

PMID:
26876614
10.

Transcriptional changes in sensory ganglia associated with primary afferent axon collateral sprouting in spared dermatome model.

Harrison BJ, Venkat G, Hutson T, Rau KK, Bunge MB, Mendell LM, Gage FH, Johnson RD, Hill C, Rouchka EC, Moon L, Petruska JC.

Genom Data. 2015 Oct 23;6:249-52. doi: 10.1016/j.gdata.2015.10.005.

11.

Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation.

Nalabothula N, Al-jumaily T, Eteleeb AM, Flight RM, Xiaorong S, Moseley H, Rouchka EC, Fondufe-Mittendorf YN.

PLoS One. 2015 Aug 25;10(8):e0135410. doi: 10.1371/journal.pone.0135410.

12.

A less-biased analysis of metalloproteins reveals novel zinc coordination geometries.

Yao S, Flight RM, Rouchka EC, Moseley HN.

Proteins. 2015 Aug;83(8):1470-87. doi: 10.1002/prot.24834.

13.

Inorganic Arsenic-induced cellular transformation is coupled with genome wide changes in chromatin structure, transcriptome and splicing patterns.

Riedmann C, Ma Y, Melikishvili M, Godfrey SG, Zhang Z, Chen KC, Rouchka EC, Fondufe-Mittendorf YN.

BMC Genomics. 2015 Mar 19;16:212. doi: 10.1186/s12864-015-1295-9.

14.

An Island-Based Approach for Differential Expression Analysis.

Eteleeb AM, Flight RM, Harrison BJ, Petruska JC, Rouchka EC.

ACM Conf Bioinform Comput Biol Biomed Inform (2013). 2013 Dec 31;2013:419-429.

15.

Proceedings of the Thirteenth Annual UT- KBRIN Bioinformatics Summit 2014.

Rouchka EC, Chariker JH.

BMC Bioinformatics. 2014;15 Suppl 10:I1. No abstract available.

16.

categoryCompare, an analytical tool based on feature annotations.

Flight RM, Harrison BJ, Mohammad F, Bunge MB, Moon LD, Petruska JC, Rouchka EC.

Front Genet. 2014 Apr 29;5:98. doi: 10.3389/fgene.2014.00098.

17.

IB4-binding sensory neurons in the adult rat express a novel 3' UTR-extended isoform of CaMK4 that is associated with its localization to axons.

Harrison BJ, Flight RM, Gomes C, Venkat G, Ellis SR, Sankar U, Twiss JL, Rouchka EC, Petruska JC.

J Comp Neurol. 2014 Feb 1;522(2):308-36. doi: 10.1002/cne.23398.

18.
19.

Proceedings of the 12th Annual UT-ORNL-KBRIN Bioinformatics Summit 2013.

Rouchka EC, Flight RM.

BMC Bioinformatics. 2013 Mar 22;14 Suppl 17:A1. No abstract available.

20.

AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities.

Mohammad F, Flight RM, Harrison BJ, Petruska JC, Rouchka EC.

BMC Bioinformatics. 2012 Sep 12;13:229. doi: 10.1186/1471-2105-13-229.

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