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Items: 1 to 20 of 306

1.

Structure-based analysis of CysZ-mediated cellular uptake of sulfate.

Assur Sanghai Z, Liu Q, Clarke OB, Belcher-Dufrisne M, Wiriyasermkul P, Giese MH, Leal-Pinto E, Kloss B, Tabuso S, Love J, Punta M, Banerjee S, Rajashankar KR, Rost B, Logothetis D, Quick M, Hendrickson WA, Mancia F.

Elife. 2018 May 24;7. pii: e27829. doi: 10.7554/eLife.27829.

2.

Correcting mistakes in predicting distributions.

Marot-Lassauzaie V, Bernhofer M, Rost B.

Bioinformatics. 2018 May 14. doi: 10.1093/bioinformatics/bty346. [Epub ahead of print]

PMID:
29762646
3.

Radiomics in radiooncology - Challenging the medical physicist.

Peeken JC, Bernhofer M, Wiestler B, Goldberg T, Cremers D, Rost B, Wilkens JJ, Combs SE, Nüsslin F.

Phys Med. 2018 Apr;48:27-36. doi: 10.1016/j.ejmp.2018.03.012. Epub 2018 Mar 27. Review.

PMID:
29728226
4.

Treatment-related features improve machine learning prediction of prognosis in soft tissue sarcoma patients.

Peeken JC, Goldberg T, Knie C, Komboz B, Bernhofer M, Pasa F, Kessel KA, Tafti PD, Rost B, Nüsslin F, Braun AE, Combs SE.

Strahlenther Onkol. 2018 Mar 20. doi: 10.1007/s00066-018-1294-2. [Epub ahead of print]

PMID:
29557486
5.

CellMap visualizes protein-protein interactions and subcellular localization.

Dallago C, Goldberg T, Andrade-Navarro MA, Alanis-Lobato G, Rost B.

Version 2. F1000Res. 2017 Oct 11 [revised 2018 Jan 1];6:1824. doi: 10.12688/f1000research.12707.2. eCollection 2017.

6.

ThreaDNA: predicting DNA mechanics' contribution to sequence selectivity of proteins along whole genomes.

Cevost J, Vaillant C, Meyer S, Rost B.

Bioinformatics. 2018 Feb 15;34(4):609-616. doi: 10.1093/bioinformatics/btx634.

PMID:
29444234
7.

LocText: relation extraction of protein localizations to assist database curation.

Cejuela JM, Vinchurkar S, Goldberg T, Prabhu Shankar MS, Baghudana A, Bojchevski A, Uhlig C, Ofner A, Raharja-Liu P, Jensen LJ, Rost B.

BMC Bioinformatics. 2018 Jan 17;19(1):15. doi: 10.1186/s12859-018-2021-9.

8.

NLSdb-major update for database of nuclear localization signals and nuclear export signals.

Bernhofer M, Goldberg T, Wolf S, Ahmed M, Zaugg J, Boden M, Rost B.

Nucleic Acids Res. 2018 Jan 4;46(D1):D503-D508. doi: 10.1093/nar/gkx1021.

9.

Optogenetic Tools for Subcellular Applications in Neuroscience.

Rost BR, Schneider-Warme F, Schmitz D, Hegemann P.

Neuron. 2017 Nov 1;96(3):572-603. doi: 10.1016/j.neuron.2017.09.047. Review.

PMID:
29096074
10.

Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome.

Hücker SM, Ardern Z, Goldberg T, Schafferhans A, Bernhofer M, Vestergaard G, Nelson CW, Schloter M, Rost B, Scherer S, Neuhaus K.

PLoS One. 2017 Sep 13;12(9):e0184119. doi: 10.1371/journal.pone.0184119. eCollection 2017.

11.

Controls of primary production in two phytoplankton blooms in the Antarctic Circumpolar Current.

Hoppe CJM, Klaas C, Ossebaar S, Soppa MA, Cheah W, Laglera LM, Santos-Echeandia J, Rost B, Wolf-Gladrow DA, Bracher A, Hoppema M, Strass V, Trimborn S.

Deep Sea Res Part 2 Top Stud Oceanogr. 2017 Apr;138:63-73. doi: 10.1016/j.dsr2.2015.10.005.

12.

Common sequence variants affect molecular function more than rare variants?

Mahlich Y, Reeb J, Hecht M, Schelling M, De Beer TAP, Bromberg Y, Rost B.

Sci Rep. 2017 May 9;7(1):1608. doi: 10.1038/s41598-017-01054-2.

13.

Effects of ocean acidification on primary production in a coastal North Sea phytoplankton community.

Eberlein T, Wohlrab S, Rost B, John U, Bach LT, Riebesell U, Van de Waal DB.

PLoS One. 2017 Mar 8;12(3):e0172594. doi: 10.1371/journal.pone.0172594. eCollection 2017.

14.

nala: text mining natural language mutation mentions.

Cejuela JM, Bojchevski A, Uhlig C, Bekmukhametov R, Kumar Karn S, Mahmuti S, Baghudana A, Dubey A, Satagopam VP, Rost B.

Bioinformatics. 2017 Jun 15;33(12):1852-1858. doi: 10.1093/bioinformatics/btx083.

15.

CO2-dependent carbon isotope fractionation in dinoflagellates relates to their inorganic carbon fluxes.

Hoins M, Eberlein T, Van de Waal DB, Sluijs A, Reichart GJ, Rost B.

J Exp Mar Bio Ecol. 2016 Aug;481:9-14. doi: 10.1016/j.jembe.2016.04.001.

16.

TMSEG: Novel prediction of transmembrane helices.

Bernhofer M, Kloppmann E, Reeb J, Rost B.

Proteins. 2016 Nov;84(11):1706-1716. doi: 10.1002/prot.25155. Epub 2016 Sep 16.

17.

Computational prediction shines light on type III secretion origins.

Goldberg T, Rost B, Bromberg Y.

Sci Rep. 2016 Oct 7;6:34516. doi: 10.1038/srep34516.

18.

RIM-binding protein 2 regulates release probability by fine-tuning calcium channel localization at murine hippocampal synapses.

Grauel MK, Maglione M, Reddy-Alla S, Willmes CG, Brockmann MM, Trimbuch T, Rosenmund T, Pangalos M, Vardar G, Stumpf A, Walter AM, Rost BR, Eickholt BJ, Haucke V, Schmitz D, Sigrist SJ, Rosenmund C.

Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11615-11620. Epub 2016 Sep 26.

19.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy.

Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P.

Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6.

20.

Human cerebrospinal fluid monoclonal N-methyl-D-aspartate receptor autoantibodies are sufficient for encephalitis pathogenesis.

Kreye J, Wenke NK, Chayka M, Leubner J, Murugan R, Maier N, Jurek B, Ly LT, Brandl D, Rost BR, Stumpf A, Schulz P, Radbruch H, Hauser AE, Pache F, Meisel A, Harms L, Paul F, Dirnagl U, Garner C, Schmitz D, Wardemann H, Prüss H.

Brain. 2016 Oct;139(Pt 10):2641-2652. Epub 2016 Aug 20.

PMID:
27543972

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