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Items: 1 to 20 of 69

1.

Evolutionary and demographic processes shaping geographic patterns of genetic diversity in a keystone species, the African forest elephant (Loxodonta cyclotis).

Ishida Y, Gugala NA, Georgiadis NJ, Roca AL.

Ecol Evol. 2018 Apr 19;8(10):4919-4931. doi: 10.1002/ece3.4062. eCollection 2018 May.

2.

Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola.

Grigorev K, Kliver S, Dobrynin P, Komissarov A, Wolfsberger W, Krasheninnikova K, Afanador-Hernández YM, Brandt AL, Paulino LA, Carreras R, Rodríguez LE, Núñez A, Brandt JR, Silva F, Hernández-Martich JD, Majeske AJ, Antunes A, Roca AL, O'Brien SJ, Martínez-Cruzado JC, Oleksyk TK.

Gigascience. 2018 Jun 1;7(6). doi: 10.1093/gigascience/giy025.

PMID:
29718205
3.

Genetic structure and diversity among historic and modern populations of the Sumatran rhinoceros (Dicerorhinus sumatrensis).

Brandt JR, Van Coeverden de Groot PJ, Witt KE, Engelbrektsson PK, Helgen KM, Malhi RS, Ryder OA, Roca AL.

J Hered. 2018 Apr 19. doi: 10.1093/jhered/esy019. [Epub ahead of print]

PMID:
29684146
4.

A comprehensive genomic history of extinct and living elephants.

Palkopoulou E, Lipson M, Mallick S, Nielsen S, Rohland N, Baleka S, Karpinski E, Ivancevic AM, To TH, Kortschak RD, Raison JM, Qu Z, Chin TJ, Alt KW, Claesson S, Dalén L, MacPhee RDE, Meller H, Roca AL, Ryder OA, Heiman D, Young S, Breen M, Williams C, Aken BL, Ruffier M, Karlsson E, Johnson J, Di Palma F, Alfoldi J, Adelson DL, Mailund T, Munch K, Lindblad-Toh K, Hofreiter M, Poinar H, Reich D.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):E2566-E2574. doi: 10.1073/pnas.1720554115. Epub 2018 Feb 26.

PMID:
29483247
5.

Appropriate fossil calibrations and tree constraints uphold the Mesozoic divergence of solenodons from other extant mammals.

Springer MS, Murphy WJ, Roca AL.

Mol Phylogenet Evol. 2018 Apr;121:158-165. doi: 10.1016/j.ympev.2018.01.007. Epub 2018 Jan 10.

PMID:
29331683
6.

Transmission, Evolution, and Endogenization: Lessons Learned from Recent Retroviral Invasions.

Greenwood AD, Ishida Y, O'Brien SP, Roca AL, Eiden MV.

Microbiol Mol Biol Rev. 2017 Dec 13;82(1). pii: e00044-17. doi: 10.1128/MMBR.00044-17. Print 2018 Mar. Review.

PMID:
29237726
7.

Palaeogenomes of Eurasian straight-tusked elephants challenge the current view of elephant evolution.

Meyer M, Palkopoulou E, Baleka S, Stiller M, Penkman KEH, Alt KW, Ishida Y, Mania D, Mallick S, Meijer T, Meller H, Nagel S, Nickel B, Ostritz S, Rohland N, Schauer K, Schüler T, Roca AL, Reich D, Shapiro B, Hofreiter M.

Elife. 2017 Jun 6;6. pii: e25413. doi: 10.7554/eLife.25413.

8.

Innate immune responses induced by lipopolysaccharide and lipoteichoic acid in primary goat mammary epithelial cells.

Bulgari O, Dong X, Roca AL, Caroli AM, Loor JJ.

J Anim Sci Biotechnol. 2017 Apr 1;8:29. doi: 10.1186/s40104-017-0162-8. eCollection 2017.

9.

Polymorphisms of the Toll-Like Receptor 2 of Goats (Capra hircus) may be Associated with Somatic Cell Count in Milk.

Ruiz-Rodriguez CT, Brandt JR, Oliverio R, Ishida Y, Guedj N, Garrett EF, Kahila Bar-Gal G, Nikolaidis N, Cardoso FC, Roca AL.

Anim Biotechnol. 2017 Apr 3;28(2):112-119. doi: 10.1080/10495398.2016.1232267. Epub 2016 Oct 28.

PMID:
27791476
10.

Genetic connectivity across marginal habitats: the elephants of the Namib Desert.

Ishida Y, Van Coeverden de Groot PJ, Leggett KE, Putnam AS, Fox VE, Lai J, Boag PT, Georgiadis NJ, Roca AL.

Ecol Evol. 2016 Aug 3;6(17):6189-201. doi: 10.1002/ece3.2352. eCollection 2016 Sep.

11.

Koalas (Phascolarctos cinereus) From Queensland Are Genetically Distinct From 2 Populations in Victoria.

Ruiz-Rodriguez CT, Ishida Y, Murray ND, O'Brien SJ, Graves JA, Greenwood AD, Roca AL.

J Hered. 2016;107(7):573-580. Epub 2016 Aug 11.

12.

Development and characterization of microsatellite markers in the African forest elephant (Loxodonta cyclotis).

Gugala NA, Ishida Y, Georgiadis NJ, Roca AL.

BMC Res Notes. 2016 Jul 26;9:364. doi: 10.1186/s13104-016-2167-3.

13.

Endogenous Gibbon Ape Leukemia Virus Identified in a Rodent (Melomys burtoni subsp.) from Wallacea (Indonesia).

Alfano N, Michaux J, Morand S, Aplin K, Tsangaras K, Löber U, Fabre PH, Fitriana Y, Semiadi G, Ishida Y, Helgen KM, Roca AL, Eiden MV, Greenwood AD.

J Virol. 2016 Aug 26;90(18):8169-80. doi: 10.1128/JVI.00723-16. Print 2016 Sep 15.

14.

Mitogenomic sequences support a north-south subspecies subdivision within Solenodon paradoxus.

Brandt AL, Grigorev K, Afanador-Hernández YM, Paulino LA, Murphy WJ, Núñez A, Komissarov A, Brandt JR, Dobrynin P, Hernández-Martich JD, María R, O'Brien SJ, Rodríguez LE, Martínez-Cruzado JC, Oleksyk TK, Roca AL.

Mitochondrial DNA A DNA Mapp Seq Anal. 2017 Sep;28(5):662-670. doi: 10.3109/24701394.2016.1167891. Epub 2016 Apr 20.

PMID:
27159724
15.

Comprehensive profiling of retroviral integration sites using target enrichment methods from historical koala samples without an assembled reference genome.

Cui P, Löber U, Alquezar-Planas DE, Ishida Y, Courtiol A, Timms P, Johnson RN, Lenz D, Helgen KM, Roca AL, Hartman S, Greenwood AD.

PeerJ. 2016 Mar 28;4:e1847. doi: 10.7717/peerj.1847. eCollection 2016.

16.

Erratum for Alfano et al., Episodic Diversifying Selection Shaped the Genomes of Gibbon Ape Leukemia Virus and Related Gammaretroviruses.

Alfano N, Kolokotronis SO, Tsangaras K, Roca AL, Xu W, Eiden MV, Greenwood AD.

J Virol. 2016 Mar 28;90(8):4254. doi: 10.1128/JVI.00210-16. Print 2016 Apr. No abstract available.

17.

Space Maintenance Using Tenting Screws in Atrophic Extraction Sockets.

Reddy TS, Shah NR, Roca AL, Sullivan A, Pascuzzi J, Drew HJ.

J Oral Implantol. 2016 Aug;42(4):353-7. doi: 10.1563/aaid-joi-D-15-00048. Epub 2016 Feb 29. No abstract available.

PMID:
26928626
18.

Evolutionary patterns of Toll-like receptor signaling pathway genes in the Suidae.

Darfour-Oduro KA, Megens HJ, Roca AL, Groenen MA, Schook LB.

BMC Evol Biol. 2016 Feb 9;16:33. doi: 10.1186/s12862-016-0602-7.

19.

Episodic Diversifying Selection Shaped the Genomes of Gibbon Ape Leukemia Virus and Related Gammaretroviruses.

Alfano N, Kolokotronis SO, Tsangaras K, Roca AL, Xu W, Eiden MV, Greenwood AD.

J Virol. 2015 Dec 4;90(4):1757-72. doi: 10.1128/JVI.02745-15. Print 2016 Feb 15. Erratum in: J Virol. 2016 Apr;90(8):4254.

20.

Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse.

Hartmann S, Hasenkamp N, Mayer J, Michaux J, Morand S, Mazzoni CJ, Roca AL, Greenwood AD.

BMC Genomics. 2015 Aug 18;16:613. doi: 10.1186/s12864-015-1766-z.

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