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Items: 1 to 20 of 27

1.

Nuclear receptor NR2F6 inhibition potentiates responses to PD-L1/PD-1 cancer immune checkpoint blockade.

Klepsch V, Hermann-Kleiter N, Do-Dinh P, Jakic B, Offermann A, Efremova M, Sopper S, Rieder D, Krogsdam A, Gamerith G, Perner S, Tzankov A, Trajanoski Z, Wolf D, Baier G.

Nat Commun. 2018 Apr 18;9(1):1538. doi: 10.1038/s41467-018-04004-2.

2.

Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution.

Efremova M, Rieder D, Klepsch V, Charoentong P, Finotello F, Hackl H, Hermann-Kleiter N, Löwer M, Baier G, Krogsdam A, Trajanoski Z.

Nat Commun. 2018 Jan 2;9(1):32. doi: 10.1038/s41467-017-02424-0.

3.

Neoantigens Generated by Individual Mutations and Their Role in Cancer Immunity and Immunotherapy.

Efremova M, Finotello F, Rieder D, Trajanoski Z.

Front Immunol. 2017 Nov 28;8:1679. doi: 10.3389/fimmu.2017.01679. eCollection 2017. Review.

4.

Osmium-Mediated Transformation of 4-Thiouridine to Cytidine as Key To Study RNA Dynamics by Sequencing.

Riml C, Amort T, Rieder D, Gasser C, Lusser A, Micura R.

Angew Chem Int Ed Engl. 2017 Oct 16;56(43):13479-13483. doi: 10.1002/anie.201707465. Epub 2017 Sep 18.

PMID:
28817234
5.

TIminer: NGS data mining pipeline for cancer immunology and immunotherapy.

Tappeiner E, Finotello F, Charoentong P, Mayer C, Rieder D, Trajanoski Z.

Bioinformatics. 2017 Oct 1;33(19):3140-3141. doi: 10.1093/bioinformatics/btx377.

6.

Analysis of High-Throughput RNA Bisulfite Sequencing Data.

Rieder D, Finotello F.

Methods Mol Biol. 2017;1562:143-154. doi: 10.1007/978-1-4939-6807-7_10.

PMID:
28349459
7.

Alveolar Ridge Dimension 6 Months After Implant Placement with Simultaneous Hard Tissue Augmentation.

Heckmann SM, Mörtlbauer B, Rieder D, Wichmann M, Krafft T, Moralis A.

Int J Oral Maxillofac Implants. 2017 Mar/Apr;32(2):408-414. doi: 10.11607/jomi.4728.

PMID:
28291858
8.

Distinct 5-methylcytosine profiles in poly(A) RNA from mouse embryonic stem cells and brain.

Amort T, Rieder D, Wille A, Khokhlova-Cubberley D, Riml C, Trixl L, Jia XY, Micura R, Lusser A.

Genome Biol. 2017 Jan 5;18(1):1. doi: 10.1186/s13059-016-1139-1.

9.

Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade.

Charoentong P, Finotello F, Angelova M, Mayer C, Efremova M, Rieder D, Hackl H, Trajanoski Z.

Cell Rep. 2017 Jan 3;18(1):248-262. doi: 10.1016/j.celrep.2016.12.019.

10.

Satb2 determines miRNA expression and long-term memory in the adult central nervous system.

Jaitner C, Reddy C, Abentung A, Whittle N, Rieder D, Delekate A, Korte M, Jain G, Fischer A, Sananbenesi F, Cera I, Singewald N, Dechant G, Apostolova G.

Elife. 2016 Nov 29;5. pii: e17361. doi: 10.7554/eLife.17361.

11.

Impaired Contextual Fear Extinction Learning is Associated with Aberrant Regulation of CHD-Type Chromatin Remodeling Factors.

Wille A, Maurer V, Piatti P, Whittle N, Rieder D, Singewald N, Lusser A.

Front Behav Neurosci. 2015 Nov 18;9:313. doi: 10.3389/fnbeh.2015.00313. eCollection 2015.

12.

meRanTK: methylated RNA analysis ToolKit.

Rieder D, Amort T, Kugler E, Lusser A, Trajanoski Z.

Bioinformatics. 2016 Mar 1;32(5):782-5. doi: 10.1093/bioinformatics/btv647. Epub 2015 Nov 4.

PMID:
26543174
13.

Impact of placement and restoration timing on single-implant esthetic outcome - a randomized clinical trial.

Rieder D, Eggert J, Krafft T, Weber HP, Wichmann MG, Heckmann SM.

Clin Oral Implants Res. 2016 Feb;27(2):e80-6. doi: 10.1111/clr.12539. Epub 2014 Dec 12.

PMID:
25496243
14.

NAT8L (N-acetyltransferase 8-like) accelerates lipid turnover and increases energy expenditure in brown adipocytes.

Pessentheiner AR, Pelzmann HJ, Walenta E, Schweiger M, Groschner LN, Graier WF, Kolb D, Uno K, Miyazaki T, Nitta A, Rieder D, Prokesch A, Bogner-Strauss JG.

J Biol Chem. 2013 Dec 13;288(50):36040-51. doi: 10.1074/jbc.M113.491324. Epub 2013 Oct 23.

15.

Co-expressed genes prepositioned in spatial neighborhoods stochastically associate with SC35 speckles and RNA polymerase II factories.

Rieder D, Ploner C, Krogsdam AM, Stocker G, Fischer M, Scheideler M, Dani C, Amri EZ, Müller WG, McNally JG, Trajanoski Z.

Cell Mol Life Sci. 2014 May;71(9):1741-59. doi: 10.1007/s00018-013-1465-3. Epub 2013 Sep 12.

PMID:
24026398
16.

Nr4a1 is required for fasting-induced down-regulation of Pparγ2 in white adipose tissue.

Duszka K, Bogner-Strauss JG, Hackl H, Rieder D, Neuhold C, Prokesch A, Trajanoski Z, Krogsdam AM.

Mol Endocrinol. 2013 Jan;27(1):135-49. doi: 10.1210/me.2012-1248. Epub 2012 Dec 18.

17.

Transcription factories.

Rieder D, Trajanoski Z, McNally JG.

Front Genet. 2012 Oct 23;3:221. doi: 10.3389/fgene.2012.00221. eCollection 2012.

18.

Arxes: retrotransposed genes required for adipogenesis.

Prokesch A, Bogner-Strauss JG, Hackl H, Rieder D, Neuhold C, Walenta E, Krogsdam A, Scheideler M, Papak C, Wong WC, Vinson C, Eisenhaber F, Trajanoski Z.

Nucleic Acids Res. 2011 Apr;39(8):3224-39. doi: 10.1093/nar/gkq1289. Epub 2010 Dec 21.

19.

Reconstruction of gene association network reveals a transmembrane protein required for adipogenesis and targeted by PPARγ.

Bogner-Strauss JG, Prokesch A, Sanchez-Cabo F, Rieder D, Hackl H, Duszka K, Krogsdam A, Di Camillo B, Walenta E, Klatzer A, Lass A, Pinent M, Wong WC, Eisenhaber F, Trajanoski Z.

Cell Mol Life Sci. 2010 Dec;67(23):4049-64. doi: 10.1007/s00018-010-0424-5. Epub 2010 Jun 15.

PMID:
20552250
20.

iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis.

Stocker G, Fischer M, Rieder D, Bindea G, Kainz S, Oberstolz M, McNally JG, Trajanoski Z.

BMC Bioinformatics. 2009 Nov 26;10:390. doi: 10.1186/1471-2105-10-390.

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