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Items: 1 to 20 of 69


Protein network construction using reverse phase protein array data.

Varghese RS, Zuo Y, Zhao Y, Zhang YW, Jablonski SA, Pierobon M, Petricoin EF, Ressom HW, Weiner LM.

Methods. 2017 Jul 15;124:89-99. doi: 10.1016/j.ymeth.2017.06.017. Epub 2017 Jun 24.


Multi-omic approaches for characterization of hepatocellular carcinoma.

Ressom HW, Di Poto C, Ferrarini A, Yunli Hu, Nezami Ranjbar MR, Ehwang Song, Varghese RS, Minkun Wang, Shiyue Zhou, Rui Zhu, Yiming Zuo, Tadesse MG, Mechref Y.

Conf Proc IEEE Eng Med Biol Soc. 2016 Aug;2016:3437-3440. doi: 10.1109/EMBC.2016.7591467.


Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO.

Zuo Y, Cui Y, Yu G, Li R, Ressom HW.

BMC Bioinformatics. 2017 Feb 10;18(1):99. doi: 10.1186/s12859-017-1515-1.


Metabolomic Characterization of Hepatocellular Carcinoma in Patients with Liver Cirrhosis for Biomarker Discovery.

Di Poto C, Ferrarini A, Zhao Y, Varghese RS, Tu C, Zuo Y, Wang M, Nezami Ranjbar MR, Luo Y, Zhang C, Desai CS, Shetty K, Tadesse MG, Ressom HW.

Cancer Epidemiol Biomarkers Prev. 2017 May;26(5):675-683. doi: 10.1158/1055-9965.EPI-16-0366. Epub 2016 Dec 2.


Metabolomic profiling of breast tumors using ductal fluid.

Matos Do Canto L, Marian C, Varghese RS, Ahn J, Da Cunha PA, Willey S, Sidawy M, Rone JD, Cheema AK, Luta G, Nezami Ranjbar MR, Ressom HW, Haddad BR.

Int J Oncol. 2016 Dec;49(6):2245-2254. doi: 10.3892/ijo.2016.3732. Epub 2016 Oct 13.


Menthol Smokers: Metabolomic Profiling and Smoking Behavior.

Hsu PC, Lan RS, Brasky TM, Marian C, Cheema AK, Ressom HW, Loffredo CA, Pickworth WB, Shields PG.

Cancer Epidemiol Biomarkers Prev. 2017 Jan;26(1):51-60. doi: 10.1158/1055-9965.EPI-16-0124. Epub 2016 Sep 14.


INDEED: Integrated differential expression and differential network analysis of omic data for biomarker discovery.

Zuo Y, Cui Y, Di Poto C, Varghese RS, Yu G, Li R, Ressom HW.

Methods. 2016 Dec 1;111:12-20. doi: 10.1016/j.ymeth.2016.08.015. Epub 2016 Aug 31.


Topic model-based mass spectrometric data analysis in cancer biomarker discovery studies.

Wang M, Tsai TH, Di Poto C, Ferrarini A, Yu G, Ressom HW.

BMC Genomics. 2016 Aug 18;17 Suppl 4:545. doi: 10.1186/s12864-016-2796-x.


Metabolomic profiles of current cigarette smokers.

Hsu PC, Lan RS, Brasky TM, Marian C, Cheema AK, Ressom HW, Loffredo CA, Pickworth WB, Shields PG.

Mol Carcinog. 2017 Feb;56(2):594-606. doi: 10.1002/mc.22519. Epub 2016 Aug 22.


Integrative Analysis of Proteomic, Glycomic, and Metabolomic Data for Biomarker Discovery.

Wang M, Yu G, Ressom HW.

IEEE J Biomed Health Inform. 2016 Sep;20(5):1225-1231. doi: 10.1109/JBHI.2016.2574201. Epub 2016 May 27.


Integrative analysis of LC-MS based glycomic and proteomic data.

Wang M, Yu G, Ressom HW.

Conf Proc IEEE Eng Med Biol Soc. 2015;2015:8185-8. doi: 10.1109/EMBC.2015.7320294.


Preprocessing and Analysis of LC-MS-Based Proteomic Data.

Tsai TH, Wang M, Ressom HW.

Methods Mol Biol. 2016;1362:63-76. doi: 10.1007/978-1-4939-3106-4_3.


Maternal Early Pregnancy Serum Metabolites and Risk of Gestational Diabetes Mellitus.

Enquobahrie DA, Denis M, Tadesse MG, Gelaye B, Ressom HW, Williams MA.

J Clin Endocrinol Metab. 2015 Nov;100(11):4348-56. doi: 10.1210/jc.2015-2862. Epub 2015 Sep 25.


Bayesian Normalization Model for Label-Free Quantitative Analysis by LC-MS.

Ranjbar MR, Tadesse MG, Wang Y, Ressom HW.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Jul-Aug;12(4):914-27. doi: 10.1109/TCBB.2014.2377723.


SIMAT: GC-SIM-MS data analysis tool.

Ranjbar MR, Di Poto C, Wang Y, Ressom HW.

BMC Bioinformatics. 2015 Aug 19;16:259. doi: 10.1186/s12859-015-0681-2.


GC-MS Based Plasma Metabolomics for Identification of Candidate Biomarkers for Hepatocellular Carcinoma in Egyptian Cohort.

Nezami Ranjbar MR, Luo Y, Di Poto C, Varghese RS, Ferrarini A, Zhang C, Sarhan NI, Soliman H, Tadesse MG, Ziada DH, Roy R, Ressom HW.

PLoS One. 2015 Jun 1;10(6):e0127299. doi: 10.1371/journal.pone.0127299. eCollection 2015.


LC-MS/MS-based serum proteomics for identification of candidate biomarkers for hepatocellular carcinoma.

Tsai TH, Song E, Zhu R, Di Poto C, Wang M, Luo Y, Varghese RS, Tadesse MG, Ziada DH, Desai CS, Shetty K, Mechref Y, Ressom HW.

Proteomics. 2015 Jul;15(13):2369-81. doi: 10.1002/pmic.201400364. Epub 2015 Apr 29.


Pathway and network approaches for identification of cancer signature markers from omics data.

Wang J, Zuo Y, Man YG, Avital I, Stojadinovic A, Liu M, Yang X, Varghese RS, Tadesse MG, Ressom HW.

J Cancer. 2015 Jan 1;6(1):54-65. doi: 10.7150/jca.10631. eCollection 2015. Review.


LC-MS profiling of N-Glycans derived from human serum samples for biomarker discovery in hepatocellular carcinoma.

Tsai TH, Wang M, Di Poto C, Hu Y, Zhou S, Zhao Y, Varghese RS, Luo Y, Tadesse MG, Ziada DH, Desai CS, Shetty K, Mechref Y, Ressom HW.

J Proteome Res. 2014 Nov 7;13(11):4859-68. doi: 10.1021/pr500460k. Epub 2014 Aug 8.

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