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Items: 1 to 20 of 62

1.

DNA Occupancy of Polymerizing Transcription Factors: A Chemical Model of the ETS Family Factor Yan.

Hope CM, Rebay I, Reinitz J.

Biophys J. 2017 Jan 10;112(1):180-192. doi: 10.1016/j.bpj.2016.11.901.

PMID:
28076810
2.

The analysis of novel distal Cebpa enhancers and silencers using a transcriptional model reveals the complex regulatory logic of hematopoietic lineage specification.

Bertolino E, Reinitz J, Manu.

Dev Biol. 2016 May 1;413(1):128-44. doi: 10.1016/j.ydbio.2016.02.030. Epub 2016 Mar 3.

PMID:
26945717
3.

Parallel Simulated Annealing Using an Adaptive Resampling Interval.

Lou Z, Reinitz J.

Parallel Comput. 2016 Apr 1;53:23-31.

4.

Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations.

Lee U, Skinner JJ, Reinitz J, Rosner MR, Kim EJ.

PLoS One. 2015 Jul 23;10(7):e0132397. doi: 10.1371/journal.pone.0132397. eCollection 2015.

5.

Natural variation of the expression pattern of the segmentation gene even-skipped in melanogaster.

Jiang P, Ludwig MZ, Kreitman M, Reinitz J.

Dev Biol. 2015 Sep 1;405(1):173-81. doi: 10.1016/j.ydbio.2015.06.019. Epub 2015 Jun 27.

6.

Gene regulation and noise reduction by coupling of stochastic processes.

Ramos AF, Hornos JE, Reinitz J.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Feb;91(2):020701. Epub 2015 Feb 26.

7.

Punctuated evolution and robustness in morphogenesis.

Grigoriev D, Reinitz J, Vakulenko S, Weber A.

Biosystems. 2014 Sep;123:106-13. doi: 10.1016/j.biosystems.2014.06.013. Epub 2014 Jul 1.

8.

Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change.

Martinez C, Rest JS, Kim AR, Ludwig M, Kreitman M, White K, Reinitz J.

Mol Biol Evol. 2014 Apr;31(4):903-16. doi: 10.1093/molbev/msu042. Epub 2014 Jan 9.

9.

A prognostic gene signature for metastasis-free survival of triple negative breast cancer patients.

Lee U, Frankenberger C, Yun J, Bevilacqua E, Caldas C, Chin SF, Rueda OM, Reinitz J, Rosner MR.

PLoS One. 2013 Dec 11;8(12):e82125. doi: 10.1371/journal.pone.0082125. eCollection 2013.

10.

Quantitative imaging of gene expression in Drosophila embryos.

Surkova S, Myasnikova E, Kozlov KN, Pisarev A, Reinitz J, Samsonova M.

Cold Spring Harb Protoc. 2013 Jun 1;2013(6):488-97. doi: 10.1101/pdb.top075101.

PMID:
23734022
11.

Preparation of Drosophila embryos for quantitative imaging of gene expression.

Surkova S, Myasnikova E, Kozlov KN, Pisarev A, Reinitz J, Samsonova M.

Cold Spring Harb Protoc. 2013 Jun 1;2013(6):533-6. doi: 10.1101/pdb.prot075093.

PMID:
23734021
12.

A synthetic biology approach to the development of transcriptional regulatory models and custom enhancer design.

Martinez CA, Barr KA, Kim AR, Reinitz J.

Methods. 2013 Jul 15;62(1):91-8. doi: 10.1016/j.ymeth.2013.05.014. Epub 2013 Jun 1.

13.

Rearrangements of 2.5 kilobases of noncoding DNA from the Drosophila even-skipped locus define predictive rules of genomic cis-regulatory logic.

Kim AR, Martinez C, Ionides J, Ramos AF, Ludwig MZ, Ogawa N, Sharp DH, Reinitz J.

PLoS Genet. 2013;9(2):e1003243. doi: 10.1371/journal.pgen.1003243. Epub 2013 Feb 28.

14.

Quantitative dynamics and increased variability of segmentation gene expression in the Drosophila Krüppel and knirps mutants.

Surkova S, Golubkova E, Manu, Panok L, Mamon L, Reinitz J, Samsonova M.

Dev Biol. 2013 Apr 1;376(1):99-112. doi: 10.1016/j.ydbio.2013.01.008. Epub 2013 Jan 17. Erratum in: Dev Biol. 2013 May 1;377(1):318.

15.

Drosophila blastoderm patterning.

Jaeger J, Manu, Reinitz J.

Curr Opin Genet Dev. 2012 Dec;22(6):533-41. doi: 10.1016/j.gde.2012.10.005. Epub 2013 Jan 4. Review.

16.

Modeling of gap gene expression in Drosophila Kruppel mutants.

Kozlov K, Surkova S, Myasnikova E, Reinitz J, Samsonova M.

PLoS Comput Biol. 2012;8(8):e1002635. doi: 10.1371/journal.pcbi.1002635. Epub 2012 Aug 23.

17.

Turing centenary: Pattern formation.

Reinitz J.

Nature. 2012 Feb 22;482(7386):464. doi: 10.1038/482464a. No abstract available.

PMID:
22358813
18.

Mechanisms of gap gene expression canalization in the Drosophila blastoderm.

Gursky VV, Panok L, Myasnikova EM, Manu, Samsonova MG, Reinitz J, Samsonov AM.

BMC Syst Biol. 2011;5:118. doi: 10.1186/1752-0509-5-118. Epub 2011 Jul 28.

19.

[Studies of stability mechanisms of early embryonal development of fruit fly Drosophila].

Surkova SIu, Gurskiĭ VV, Reinitz J, Samsonova MG.

Ontogenez. 2011 Jan-Feb;42(1):3-19. Russian.

20.

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