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Items: 1 to 20 of 145

1.

Formula Feeding Predisposes Neonatal Piglets to Clostridium difficile Gut Infection.

Grzeskowiak L, Martínez-Vallespín B, Dadi TH, Radloff J, Amasheh S, Heinsen FA, Franke A, Reinert K, Vahjen W, Zentek J, Pieper R.

J Infect Dis. 2018 Apr 11;217(9):1442-1452. doi: 10.1093/infdis/jix567.

PMID:
29099941
2.

The SeqAn C++ template library for efficient sequence analysis: A resource for programmers.

Reinert K, Dadi TH, Ehrhardt M, Hauswedell H, Mehringer S, Rahn R, Kim J, Pockrandt C, Winkler J, Siragusa E, Urgese G, Weese D.

J Biotechnol. 2017 Nov 10;261:157-168. doi: 10.1016/j.jbiotec.2017.07.017. Epub 2017 Sep 6.

3.

OpenMS - A platform for reproducible analysis of mass spectrometry data.

Pfeuffer J, Sachsenberg T, Alka O, Walzer M, Fillbrunn A, Nilse L, Schilling O, Reinert K, Kohlbacher O.

J Biotechnol. 2017 Nov 10;261:142-148. doi: 10.1016/j.jbiotec.2017.05.016. Epub 2017 May 27.

4.

Flexbar 3.0 - SIMD and multicore parallelization.

Roehr JT, Dieterich C, Reinert K.

Bioinformatics. 2017 Sep 15;33(18):2941-2942. doi: 10.1093/bioinformatics/btx330.

PMID:
28541403
5.

SLIMM: species level identification of microorganisms from metagenomes.

Dadi TH, Renard BY, Wieler LH, Semmler T, Reinert K.

PeerJ. 2017 Mar 28;5:e3138. doi: 10.7717/peerj.3138. eCollection 2017.

6.

Alternate-locus aware variant calling in whole genome sequencing.

Jäger M, Schubach M, Zemojtel T, Reinert K, Church DM, Robinson PN.

Genome Med. 2016 Dec 13;8(1):130.

7.

High-performance liquid chromatography with electrospray ionization ion mobility spectrometry: Characterization, data management, and applications.

Zühlke M, Riebe D, Beitz T, Löhmannsröben HG, Andreotti S, Reinert K, Zenichowski K, Diener M.

J Sep Sci. 2016 Dec;39(24):4756-4764. doi: 10.1002/jssc.201600749. Epub 2016 Nov 28.

PMID:
27805770
8.

Development and optimisation of a generic micro LC-ESI-MS method for the qualitative and quantitative determination of 30-mer toxic gliadin peptides in wheat flour for food analysis.

Vatansever B, Muñoz A, Klein CL, Reinert K.

Anal Bioanal Chem. 2017 Feb;409(4):989-997. doi: 10.1007/s00216-016-0013-z. Epub 2016 Oct 28.

PMID:
27796452
9.

In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.

Audain E, Uszkoreit J, Sachsenberg T, Pfeuffer J, Liang X, Hermjakob H, Sanchez A, Eisenacher M, Reinert K, Tabb DL, Kohlbacher O, Perez-Riverol Y.

J Proteomics. 2017 Jan 6;150:170-182. doi: 10.1016/j.jprot.2016.08.002. Epub 2016 Aug 4.

PMID:
27498275
10.

OpenMS: a flexible open-source software platform for mass spectrometry data analysis.

Röst HL, Sachsenberg T, Aiche S, Bielow C, Weisser H, Aicheler F, Andreotti S, Ehrlich HC, Gutenbrunner P, Kenar E, Liang X, Nahnsen S, Nilse L, Pfeuffer J, Rosenberger G, Rurik M, Schmitt U, Veit J, Walzer M, Wojnar D, Wolski WE, Schilling O, Choudhary JS, Malmström L, Aebersold R, Reinert K, Kohlbacher O.

Nat Methods. 2016 Aug 30;13(9):741-8. doi: 10.1038/nmeth.3959.

PMID:
27575624
11.

The Role of Religious Involvement in the Relationship Between Early Trauma and Health Outcomes Among Adult Survivors.

Reinert KG, Campbell JC, Bandeen-Roche K, Lee JW, Szanton S.

J Child Adolesc Trauma. 2016;9:231-241. Epub 2015 Nov 23.

12.

From the desktop to the grid: scalable bioinformatics via workflow conversion.

de la Garza L, Veit J, Szolek A, Röttig M, Aiche S, Gesing S, Reinert K, Kohlbacher O.

BMC Bioinformatics. 2016 Mar 12;17:127. doi: 10.1186/s12859-016-0978-9.

13.

CIDANE: comprehensive isoform discovery and abundance estimation.

Canzar S, Andreotti S, Weese D, Reinert K, Klau GW.

Genome Biol. 2016 Jan 30;17:16. doi: 10.1186/s13059-015-0865-0.

14.

Gender and Race Variations in the Intersection of Religious Involvement, Early Trauma, and Adult Health.

Reinert KG, Campbell JC, Bandeen-Roche K, Sharps P, Lee J.

J Nurs Scholarsh. 2015 Jul;47(4):318-27. doi: 10.1111/jnu.12144. Epub 2015 Jun 15.

15.

Evaluation of drug-induced neurotoxicity based on metabolomics, proteomics and electrical activity measurements in complementary CNS in vitro models.

Schultz L, Zurich MG, Culot M, da Costa A, Landry C, Bellwon P, Kristl T, Hörmann K, Ruzek S, Aiche S, Reinert K, Bielow C, Gosselet F, Cecchelli R, Huber CG, Schroeder OH, Gramowski-Voss A, Weiss DG, Bal-Price A.

Toxicol In Vitro. 2015 Dec 25;30(1 Pt A):138-65. doi: 10.1016/j.tiv.2015.05.016. Epub 2015 May 27.

16.

IMSEQ--a fast and error aware approach to immunogenetic sequence analysis.

Kuchenbecker L, Nienen M, Hecht J, Neumann AU, Babel N, Reinert K, Robinson PN.

Bioinformatics. 2015 Sep 15;31(18):2963-71. doi: 10.1093/bioinformatics/btv309. Epub 2015 May 18.

PMID:
25987567
17.

Alignment of Next-Generation Sequencing Reads.

Reinert K, Langmead B, Weese D, Evers DJ.

Annu Rev Genomics Hum Genet. 2015;16:133-51. doi: 10.1146/annurev-genom-090413-025358. Epub 2015 May 4. Review.

PMID:
25939052
18.

Methods for the detection and assembly of novel sequence in high-throughput sequencing data.

Holtgrewe M, Kuchenbecker L, Reinert K.

Bioinformatics. 2015 Jun 15;31(12):1904-12. doi: 10.1093/bioinformatics/btv051. Epub 2015 Feb 2.

PMID:
25649620
19.

Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry.

Aiche S, Sachsenberg T, Kenar E, Walzer M, Wiswedel B, Kristl T, Boyles M, Duschl A, Huber CG, Berthold MR, Reinert K, Kohlbacher O.

Proteomics. 2015 Apr;15(8):1443-7. doi: 10.1002/pmic.201400391. Epub 2015 Feb 14.

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