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Items: 1 to 20 of 32

1.

TB-EFI, a novel 18-Plex microbead-based method for prediction of second-line drugs and ethambutol resistance in Mycobacterium tuberculosis complex.

Klotoe BJ, Molina-Moya B, Gomes HM, Gomgnimbou MK, Suzarte LO, Féres Saad MH, Ali S, Dominguez J, Pimkina E, Zholdybayeva E, Sola C, Refrégier G.

J Microbiol Methods. 2018 Jun 15. pii: S0167-7012(18)30306-3. doi: 10.1016/j.mimet.2018.06.003. [Epub ahead of print]

PMID:
29913189
2.

Reverse line probe assay for cheap detection of Single Nucleotide Polymorphisms in Mycobacterium tuberculosis.

Yasmin M, Refregier G, Siddiqui RT, Iqbal R, Abbasi SA, Tahseen S.

Tuberculosis (Edinb). 2018 May;110:52-55. doi: 10.1016/j.tube.2018.03.007. Epub 2018 Mar 26.

PMID:
29779773
3.

Correlation between the BACTEC MGIT 960 culture system with Genotype MTBDRplus and TB-SPRINT in multidrug resistant Mycobacterium tuberculosis clinical isolates from Brazil.

Dantas NGT, Suffys PN, Carvalho WDS, Gomes HM, Almeida IN, Figueiredo LJA, Gonçalves AD, Gomgnimbou MK, Refregier G, Sola C, Miranda SS.

Mem Inst Oswaldo Cruz. 2017 Nov;112(11):769-774. doi: 10.1590/0074-02760170062. Erratum in: Mem Inst Oswaldo Cruz. 2018 Feb 19;113(4):e170062ER.

4.

Assessment of tuberculosis spatial hotspot areas in Antananarivo, Madagascar, by combining spatial analysis and genotyping.

Ratovonirina NH, Rakotosamimanana N, Razafimahatratra SL, Raherison MS, Refrégier G, Sola C, Rakotomanana F, Rasolofo Razanamparany V.

BMC Infect Dis. 2017 Aug 14;17(1):562. doi: 10.1186/s12879-017-2653-9.

5.

Molecular Characterization of Mycobacterium tuberculosis Strains with TB-SPRINT.

Molina-Moya B, Gomgnimbou MK, Lafoz C, Lacoma A, Prat C, Refrégier G, Samper S, Dominguez J, Sola C.

Am J Trop Med Hyg. 2017 Sep;97(3):806-809. doi: 10.4269/ajtmh.16-0782. Epub 2017 Jul 19.

PMID:
28722603
6.

Quick and cheap MIRU-VNTR typing of Mycobacterium tuberculosis species complex using duplex PCR.

Yasmin M, Le Moullec S, Siddiqui RT, De Beer J, Sola C, Refrégier G.

Tuberculosis (Edinb). 2016 Dec;101:160-163. doi: 10.1016/j.tube.2016.10.003. Epub 2016 Oct 3.

PMID:
27865388
7.

Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor.

Refrégier G, Abadia E, Matsumoto T, Ano H, Takashima T, Tsuyuguchi I, Aktas E, Cömert F, Gomgnimbou MK, Panaiotov S, Phelan J, Coll F, McNerney R, Pain A, Clark TG, Sola C.

Infect Genet Evol. 2016 Nov;45:461-473. doi: 10.1016/j.meegid.2016.10.009. Epub 2016 Oct 14.

PMID:
27746295
8.

Genetic diversity and molecular epidemiology of multidrug-resistant Mycobacterium tuberculosis in Minas Gerais State, Brazil.

Dantas NG, Suffys PN, Carvalho Wda S, Gomes HM, de Almeida IN, de Assis LJ, Augusto CJ, Gomgnimbou MK, Refregier G, Sola C, de Miranda SS.

BMC Infect Dis. 2015 Aug 1;15:306. doi: 10.1186/s12879-015-1057-y.

9.

Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm.

Azé J, Sola C, Zhang J, Lafosse-Marin F, Yasmin M, Siddiqui R, Kremer K, van Soolingen D, Refrégier G.

PLoS One. 2015 Jul 8;10(7):e0130912. doi: 10.1371/journal.pone.0130912. eCollection 2015.

10.

Molecular epidemiology of tuberculosis in Sicily, Italy: what has changed after a decade?

Bonura C, Gomgnimbou MK, Refrégier G, Aleo A, Fasciana T, Giammanco A, Sola C, Mammina C.

BMC Infect Dis. 2014 Nov 19;14:602. doi: 10.1186/s12879-014-0602-4.

11.

Multi-drug resistant Mycobacterium tuberculosis complex genetic diversity and clues on recent transmission in Punjab, Pakistan.

Yasmin M, Gomgnimbou MK, Siddiqui RT, Refrégier G, Sola C.

Infect Genet Evol. 2014 Oct;27:6-14. doi: 10.1016/j.meegid.2014.06.017. Epub 2014 Jun 27.

PMID:
24981519
12.

Validation of a microbead-based format for spoligotyping of Legionella pneumophila.

Gomgnimbou MK, Ginevra C, Peron-Cane C, Versapuech M, Refrégier G, Jacotin N, Sola C, Jarraud S.

J Clin Microbiol. 2014 Jul;52(7):2410-5. doi: 10.1128/JCM.00219-14. Epub 2014 Apr 23.

13.

Tuberculosis-spoligo-rifampin-isoniazid typing: an all-in-one assay technique for surveillance and control of multidrug-resistant tuberculosis on Luminex devices.

Gomgnimbou MK, Hernández-Neuta I, Panaiotov S, Bachiyska E, Palomino JC, Martin A, del Portillo P, Refregier G, Sola C.

J Clin Microbiol. 2013 Nov;51(11):3527-34. doi: 10.1128/JCM.01523-13. Epub 2013 Aug 21.

14.

Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution.

de Vienne DM, Refrégier G, López-Villavicencio M, Tellier A, Hood ME, Giraud T.

New Phytol. 2013 Apr;198(2):347-85. doi: 10.1111/nph.12150. Epub 2013 Feb 25. Review.

15.

"Spoligoriftyping," a dual-priming-oligonucleotide-based direct-hybridization assay for tuberculosis control with a multianalyte microbead-based hybridization system.

Gomgnimbou MK, Abadia E, Zhang J, Refrégier G, Panaiotov S, Bachiyska E, Sola C.

J Clin Microbiol. 2012 Oct;50(10):3172-9. doi: 10.1128/JCM.00976-12. Epub 2012 Jul 18.

16.

A molecular epidemiological and genetic diversity study of tuberculosis in Ibadan, Nnewi and Abuja, Nigeria.

Lawson L, Zhang J, Gomgnimbou MK, Abdurrahman ST, Le Moullec S, Mohamed F, Uzoewulu GN, Sogaolu OM, Goh KS, Emenyonu N, Refrégier G, Cuevas LE, Sola C.

PLoS One. 2012;7(6):e38409. doi: 10.1371/journal.pone.0038409. Epub 2012 Jun 18.

17.

Spoligotyping of Mycobacterium africanum, Burkina Faso.

Gomgnimbou MK, Refrégier G, Diagbouga SP, Adama S, Kaboré A, Ouiminga A, Sola C.

Emerg Infect Dis. 2012 Jan;18(1):117-9. doi: 10.3201/eid1801.110275.

18.

Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis.

Borile C, Labarre M, Franz S, Sola C, Refrégier G.

BMC Bioinformatics. 2011 Jun 2;12:224. doi: 10.1186/1471-2105-12-224.

19.

The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: providing guidelines for Quality Assurance when working on membranes.

Abadia E, Zhang J, Ritacco V, Kremer K, Ruimy R, Rigouts L, Gomes HM, Elias AR, Fauville-Dufaux M, Stoffels K, Rasolofo-Razanamparany V, Garcia de Viedma D, Herranz M, Al-Hajoj S, Rastogi N, Garzelli C, Tortoli E, Suffys PN, van Soolingen D, Refrégier G, Sola C.

BMC Infect Dis. 2011 Apr 28;11:110. doi: 10.1186/1471-2334-11-110.

20.

A first assessment of the genetic diversity of Mycobacterium tuberculosis complex in Cambodia.

Zhang J, Heng S, Le Moullec S, Refregier G, Gicquel B, Sola C, Guillard B.

BMC Infect Dis. 2011 Feb 7;11:42. doi: 10.1186/1471-2334-11-42.

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