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The sponge microbiome project.

Moitinho-Silva L, Nielsen S, Amir A, Gonzalez A, Ackermann GL, Cerrano C, Astudillo-Garcia C, Easson C, Sipkema D, Liu F, Steinert G, Kotoulas G, McCormack GP, Feng G, Bell JJ, Vicente J, Björk JR, Montoya JM, Olson JB, Reveillaud J, Steindler L, Pineda MC, Marra MV, Ilan M, Taylor MW, Polymenakou P, Erwin PM, Schupp PJ, Simister RL, Knight R, Thacker RW, Costa R, Hill RT, Lopez-Legentil S, Dailianis T, Ravasi T, Hentschel U, Li Z, Webster NS, Thomas T.

Gigascience. 2017 Oct 1;6(10):1-7. doi: 10.1093/gigascience/gix077.


Anti-cancer agents in Saudi Arabian herbals revealed by automated high-content imaging.

Hajjar D, Kremb S, Sioud S, Emwas AH, Voolstra CR, Ravasi T.

PLoS One. 2017 Jun 13;12(6):e0177316. doi: 10.1371/journal.pone.0177316. eCollection 2017.


Astrocyte-specific overexpressed gene signatures in response to methamphetamine exposure in vitro.

Bortell N, Basova L, Semenova S, Fox HS, Ravasi T, Marcondes MC.

J Neuroinflammation. 2017 Mar 9;14(1):49. doi: 10.1186/s12974-017-0825-6.


Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle.

Aranda M, Li Y, Liew YJ, Baumgarten S, Simakov O, Wilson MC, Piel J, Ashoor H, Bougouffa S, Bajic VB, Ryu T, Ravasi T, Bayer T, Micklem G, Kim H, Bhak J, LaJeunesse TC, Voolstra CR.

Sci Rep. 2016 Dec 22;6:39734. doi: 10.1038/srep39734.


Shedding light on cell compartmentation in the candidate phylum Poribacteria by high resolution visualisation and transcriptional profiling.

Jahn MT, Markert SM, Ryu T, Ravasi T, Stigloher C, Hentschel U, Moitinho-Silva L.

Sci Rep. 2016 Oct 31;6:35860. doi: 10.1038/srep35860.


Functionalized magnetic nanowires for chemical and magneto-mechanical induction of cancer cell death.

Martínez-Banderas AI, Aires A, Teran FJ, Perez JE, Cadenas JF, Alsharif N, Ravasi T, Cortajarena AL, Kosel J.

Sci Rep. 2016 Oct 24;6:35786. doi: 10.1038/srep35786.


Sex Change in Clownfish: Molecular Insights from Transcriptome Analysis.

Casas L, Saborido-Rey F, Ryu T, Michell C, Ravasi T, Irigoien X.

Sci Rep. 2016 Oct 17;6:35461. doi: 10.1038/srep35461.


Characterization of piRNAs across postnatal development in mouse brain.

Ghosheh Y, Seridi L, Ryu T, Takahashi H, Orlando V, Carninci P, Ravasi T.

Sci Rep. 2016 Apr 26;6:25039. doi: 10.1038/srep25039.


Methamphetamine abuse affects gene expression in brain-derived microglia of SIV-infected macaques to enhance inflammation and promote virus targets.

Najera JA, Bustamante EA, Bortell N, Morsey B, Fox HS, Ravasi T, Marcondes MC.

BMC Immunol. 2016 Apr 23;17(1):7. doi: 10.1186/s12865-016-0145-0.


Correction: miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria.

Liew YJ, Ryu T, Aranda M, Ravasi T.

PLoS One. 2016 Apr 11;11(4):e0153731. doi: 10.1371/journal.pone.0153731. eCollection 2016. No abstract available.


Cytotoxic effects of nickel nanowires in human fibroblasts.

Felix LP, Perez JE, Contreras MF, Ravasi T, Kosel J.

Toxicol Rep. 2016 Mar 9;3:373-380. doi: 10.1016/j.toxrep.2016.03.004. eCollection 2016.


Hologenome analysis of two marine sponges with different microbiomes.

Ryu T, Seridi L, Moitinho-Silva L, Oates M, Liew YJ, Mavromatis C, Wang X, Haywood A, Lafi FF, Kupresanin M, Sougrat R, Alzahrani MA, Giles E, Ghosheh Y, Schunter C, Baumgarten S, Berumen ML, Gao X, Aranda M, Foret S, Gough J, Voolstra CR, Hentschel U, Ravasi T.

BMC Genomics. 2016 Feb 29;17:158. doi: 10.1186/s12864-016-2501-0.


miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria.

Liew YJ, Ryu T, Aranda M, Ravasi T.

PLoS One. 2016 Feb 12;11(2):e0149080. doi: 10.1371/journal.pone.0149080. eCollection 2016. Erratum in: PLoS One. 2016;11(4):e0153731.


Semi-automated quantification of living cells with internalized nanostructures.

Margineanu MB, Julfakyan K, Sommer C, Perez JE, Contreras MF, Khashab N, Kosel J, Ravasi T.

J Nanobiotechnology. 2016 Jan 15;14:4. doi: 10.1186/s12951-015-0153-x.


Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea.

Chandramouli KH, Al-Aqeel S, Ryu T, Zhang H, Seridi L, Ghosheh Y, Qian PY, Ravasi T.

BMC Genomics. 2015 Dec 15;16:1063. doi: 10.1186/s12864-015-2262-1.


Proteomic Changes Associated with Successive Reproductive Periods in Male Polychaetous Neanthes arenaceodentata.

Chandramouli KH, Reish D, Zhang H, Qian PY, Ravasi T.

Sci Rep. 2015 Sep 4;5:13561. doi: 10.1038/srep13561.


Exploring seascape genetics and kinship in the reef sponge Stylissa carteri in the Red Sea.

Giles EC, Saenz-Agudelo P, Hussey NE, Ravasi T, Berumen ML.

Ecol Evol. 2015 Jul;5(13):2487-502. doi: 10.1002/ece3.1511. Epub 2015 Jun 1.


Erratum: From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks.

Cannistraci CV, Alanis-Lobato G, Ravasi T.

Sci Rep. 2015 Jul 21;5:9794. doi: 10.1038/srep09794. No abstract available.


Non-chemotoxic induction of cancer cell death using magnetic nanowires.

Contreras MF, Sougrat R, Zaher A, Ravasi T, Kosel J.

Int J Nanomedicine. 2015 Mar 17;10:2141-53. doi: 10.2147/IJN.S77081. eCollection 2015.


Highlighting nonlinear patterns in population genetics datasets.

Alanis-Lobato G, Cannistraci CV, Eriksson A, Manica A, Ravasi T.

Sci Rep. 2015 Jan 30;5:8140. doi: 10.1038/srep08140.

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