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Items: 1 to 20 of 76

1.

Coral-associated viral communities show high levels of diversity and host auxiliary functions.

Weynberg KD, Laffy PW, Wood-Charlson EM, Turaev D, Rattei T, Webster NS, van Oppen MJH.

PeerJ. 2017 Nov 17;5:e4054. doi: 10.7717/peerj.4054. eCollection 2017.

2.

Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets.

Walker A, Pfitzner B, Harir M, Schaubeck M, Calasan J, Heinzmann SS, Turaev D, Rattei T, Endesfelder D, Castell WZ, Haller D, Schmid M, Hartmann A, Schmitt-Kopplin P.

Sci Rep. 2017 Sep 8;7(1):11047. doi: 10.1038/s41598-017-10369-z.

3.

Variant profiling of evolving prokaryotic populations.

Zojer M, Schuster LN, Schulz F, Pfundner A, Horn M, Rattei T.

PeerJ. 2017 Feb 16;5:e2997. doi: 10.7717/peerj.2997. eCollection 2017.

4.

Lifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri, a Core Member of the Murine Gut Microbiota.

Loy A, Pfann C, Steinberger M, Hanson B, Herp S, Brugiroux S, Gomes Neto JC, Boekschoten MV, Schwab C, Urich T, Ramer-Tait AE, Rattei T, Stecher B, Berry D.

mSystems. 2017 Jan 31;2(1). pii: e00171-16. doi: 10.1128/mSystems.00171-16. eCollection 2017 Jan-Feb.

5.

Development of a human vasopressin V1a-receptor antagonist from an evolutionary-related insect neuropeptide.

Di Giglio MG, Muttenthaler M, Harpsøe K, Liutkeviciute Z, Keov P, Eder T, Rattei T, Arrowsmith S, Wray S, Marek A, Elbert T, Alewood PF, Gloriam DE, Gruber CW.

Sci Rep. 2017 Feb 1;7:41002. doi: 10.1038/srep41002.

6.

Unraveling the microbial processes of black band disease in corals through integrated genomics.

Sato Y, Ling EY, Turaev D, Laffy P, Weynberg KD, Rattei T, Willis BL, Bourne DG.

Sci Rep. 2017 Jan 17;7:40455. doi: 10.1038/srep40455.

7.

A distinct microbiota composition is associated with protection from food allergy in an oral mouse immunization model.

Diesner SC, Bergmayr C, Pfitzner B, Assmann V, Krishnamurthy D, Starkl P, Endesfelder D, Rothballer M, Welzl G, Rattei T, Eiwegger T, Szépfalusi Z, Fehrenbach H, Jensen-Jarolim E, Hartmann A, Pali-Schöll I, Untersmayr E.

Clin Immunol. 2016 Dec;173:10-18. doi: 10.1016/j.clim.2016.10.009. Epub 2016 Oct 24.

8.

NVT: a fast and simple tool for the assessment of RNA-seq normalization strategies.

Eder T, Grebien F, Rattei T.

Bioinformatics. 2016 Dec 1;32(23):3682-3684. doi: 10.1093/bioinformatics/btw521. Epub 2016 Aug 11.

9.

Comprehensive Identification of Meningococcal Genes and Small Noncoding RNAs Required for Host Cell Colonization.

Capel E, Zomer AL, Nussbaumer T, Bole C, Izac B, Frapy E, Meyer J, Bouzinba-Ségard H, Bille E, Jamet A, Cavau A, Letourneur F, Bourdoulous S, Rattei T, Nassif X, Coureuil M.

MBio. 2016 Aug 2;7(4). pii: e01173-16. doi: 10.1128/mBio.01173-16.

10.

HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts.

Laffy PW, Wood-Charlson EM, Turaev D, Weynberg KD, Botté ES, van Oppen MJ, Webster NS, Rattei T.

Front Microbiol. 2016 Jun 9;7:822. doi: 10.3389/fmicb.2016.00822. eCollection 2016.

11.

Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies.

Güllert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B, Alawi M, Rattei T, Daniel R, Schmitz RA, Grundhoff A, Streit WR.

Biotechnol Biofuels. 2016 Jun 7;9:121. doi: 10.1186/s13068-016-0534-x. eCollection 2016.

12.

Transcriptomic and Proteomic Analysis of Arion vulgaris--Proteins for Probably Successful Survival Strategies?

Bulat T, Smidak R, Sialana FJ, Jung G, Rattei T, Bilban M, Sattmann H, Lubec G, Aradska J.

PLoS One. 2016 Mar 17;11(3):e0150614. doi: 10.1371/journal.pone.0150614. eCollection 2016.

13.

The 5300-year-old Helicobacter pylori genome of the Iceman.

Maixner F, Krause-Kyora B, Turaev D, Herbig A, Hoopmann MR, Hallows JL, Kusebauch U, Vigl EE, Malfertheiner P, Megraud F, O'Sullivan N, Cipollini G, Coia V, Samadelli M, Engstrand L, Linz B, Moritz RL, Grimm R, Krause J, Nebel A, Moodley Y, Rattei T, Zink A.

Science. 2016 Jan 8;351(6269):162-165. doi: 10.1126/science.aad2545.

14.

A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses.

Weinmaier T, Probst AJ, La Duc MT, Ciobanu D, Cheng JF, Ivanova N, Rattei T, Vaishampayan P.

Microbiome. 2015 Dec 8;3:62. doi: 10.1186/s40168-015-0129-y.

15.

Complete nitrification by Nitrospira bacteria.

Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M, Jehmlich N, Palatinszky M, Vierheilig J, Bulaev A, Kirkegaard RH, von Bergen M, Rattei T, Bendinger B, Nielsen PH, Wagner M.

Nature. 2015 Dec 24;528(7583):504-9. doi: 10.1038/nature16461. Epub 2015 Nov 26.

16.

EffectiveDB--updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.

Eichinger V, Nussbaumer T, Platzer A, Jehl MA, Arnold R, Rattei T.

Nucleic Acids Res. 2016 Jan 4;44(D1):D669-74. doi: 10.1093/nar/gkv1269. Epub 2015 Nov 20.

17.

probeBase--an online resource for rRNA-targeted oligonucleotide probes and primers: new features 2016.

Greuter D, Loy A, Horn M, Rattei T.

Nucleic Acids Res. 2016 Jan 4;44(D1):D586-9. doi: 10.1093/nar/gkv1232. Epub 2015 Nov 19.

18.

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.

Huerta-Cepas J, Szklarczyk D, Forslund K, Cook H, Heller D, Walter MC, Rattei T, Mende DR, Sunagawa S, Kuhn M, Jensen LJ, von Mering C, Bork P.

Nucleic Acids Res. 2016 Jan 4;44(D1):D286-93. doi: 10.1093/nar/gkv1248. Epub 2015 Nov 17.

19.

Prediction of microbial phenotypes based on comparative genomics.

Feldbauer R, Schulz F, Horn M, Rattei T.

BMC Bioinformatics. 2015;16 Suppl 14:S1. doi: 10.1186/1471-2105-16-S14-S1. Epub 2015 Oct 2.

20.

Transcriptome Profiling of the Endophyte Burkholderia phytofirmans PsJN Indicates Sensing of the Plant Environment and Drought Stress.

Sheibani-Tezerji R, Rattei T, Sessitsch A, Trognitz F, Mitter B.

MBio. 2015 Sep 8;6(5):e00621-15. doi: 10.1128/mBio.00621-15.

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