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Items: 19

1.

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome.

Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, Young SK, Hegarty R, Daza R, Gujja S, Wortman JR, Birren BW, Nusbaum C, Thomas J, Carey CM, Pritham EJ, Feschotte C, Noto T, Mochizuki K, Papazyan R, Taverna SD, Dear PH, Cassidy-Hanley DM, Xiong J, Miao W, Orias E, Coyne RS.

Elife. 2016 Nov 28;5. pii: e19090. doi: 10.7554/eLife.19090.

2.

Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and Superdynamic Intron Evolution.

Hoy MA, Waterhouse RM, Wu K, Estep AS, Ioannidis P, Palmer WJ, Pomerantz AF, Simão FA, Thomas J, Jiggins FM, Murphy TD, Pritham EJ, Robertson HM, Zdobnov EM, Gibbs RA, Richards S.

Genome Biol Evol. 2016 Jun 27;8(6):1762-75. doi: 10.1093/gbe/evw048.

3.

A Helitron transposon reconstructed from bats reveals a novel mechanism of genome shuffling in eukaryotes.

Grabundzija I, Messing SA, Thomas J, Cosby RL, Bilic I, Miskey C, Gogol-Döring A, Kapitonov V, Diem T, Dalda A, Jurka J, Pritham EJ, Dyda F, Izsvák Z, Ivics Z.

Nat Commun. 2016 Mar 2;7:10716. doi: 10.1038/ncomms10716.

4.

Rolling-circle transposons catalyze genomic innovation in a mammalian lineage.

Thomas J, Phillips CD, Baker RJ, Pritham EJ.

Genome Biol Evol. 2014 Sep 14;6(10):2595-610. doi: 10.1093/gbe/evu204.

5.
6.

The ecoresponsive genome of Daphnia pulex.

Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL.

Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761.

7.

Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics.

Arensburger P, Megy K, Waterhouse RM, Abrudan J, Amedeo P, Antelo B, Bartholomay L, Bidwell S, Caler E, Camara F, Campbell CL, Campbell KS, Casola C, Castro MT, Chandramouliswaran I, Chapman SB, Christley S, Costas J, Eisenstadt E, Feschotte C, Fraser-Liggett C, Guigo R, Haas B, Hammond M, Hansson BS, Hemingway J, Hill SR, Howarth C, Ignell R, Kennedy RC, Kodira CD, Lobo NF, Mao C, Mayhew G, Michel K, Mori A, Liu N, Naveira H, Nene V, Nguyen N, Pearson MD, Pritham EJ, Puiu D, Qi Y, Ranson H, Ribeiro JM, Roberston HM, Severson DW, Shumway M, Stanke M, Strausberg RL, Sun C, Sutton G, Tu ZJ, Tubio JM, Unger MF, Vanlandingham DL, Vilella AJ, White O, White JR, Wondji CS, Wortman J, Zdobnov EM, Birren B, Christensen BM, Collins FH, Cornel A, Dimopoulos G, Hannick LI, Higgs S, Lanzaro GC, Lawson D, Lee NH, Muskavitch MA, Raikhel AS, Atkinson PW.

Science. 2010 Oct 1;330(6000):86-8. doi: 10.1126/science.1191864.

8.

Pervasive horizontal transfer of rolling-circle transposons among animals.

Thomas J, Schaack S, Pritham EJ.

Genome Biol Evol. 2010;2:656-64. doi: 10.1093/gbe/evq050. Epub 2010 Aug 6.

9.

Phantom, a new subclass of Mutator DNA transposons found in insect viruses and widely distributed in animals.

Marquez CP, Pritham EJ.

Genetics. 2010 Aug;185(4):1507-17. doi: 10.1534/genetics.110.116673. Epub 2010 May 10.

10.

DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex.

Schaack S, Choi E, Lynch M, Pritham EJ.

Genome Biol. 2010;11(4):R46. doi: 10.1186/gb-2010-11-4-r46. Epub 2010 Apr 30.

11.

DNA transposon dynamics in populations of Daphnia pulex with and without sex.

Schaack S, Pritham EJ, Wolf A, Lynch M.

Proc Biol Sci. 2010 Aug 7;277(1692):2381-7. doi: 10.1098/rspb.2009.2253. Epub 2010 Mar 31.

12.

A cornucopia of Helitrons shapes the maize genome.

Feschotte C, Pritham EJ.

Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19747-8. doi: 10.1073/pnas.0910273106. Epub 2009 Nov 19. No abstract available.

13.

Transposable elements and factors influencing their success in eukaryotes.

Pritham EJ.

J Hered. 2009 Sep-Oct;100(5):648-55. doi: 10.1093/jhered/esp065. Epub 2009 Aug 7. Review.

14.

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus.

Ray DA, Feschotte C, Pagan HJ, Smith JD, Pritham EJ, Arensburger P, Atkinson PW, Craig NL.

Genome Res. 2008 May;18(5):717-28. doi: 10.1101/gr.071886.107. Epub 2008 Mar 13.

15.

DNA transposons and the evolution of eukaryotic genomes.

Feschotte C, Pritham EJ.

Annu Rev Genet. 2007;41:331-68. Review.

16.

Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus.

Pritham EJ, Feschotte C.

Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1895-900. Epub 2007 Jan 29.

17.

The transposable element landscape of the model legume Lotus japonicus.

Holligan D, Zhang X, Jiang N, Pritham EJ, Wessler SR.

Genetics. 2006 Dec;174(4):2215-28. Epub 2006 Oct 8.

18.

Mobile DNA: genomes under the influence.

Feschotte C, Pritham EJ.

Genome Biol. 2006;7(6):320.

19.

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