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Items: 9

1.

Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection.

Kamber T, Buchmann JP, Pothier JF, Smits TH, Wicker T, Duffy B.

Sci Rep. 2016 Feb 17;6:21600. doi: 10.1038/srep21600.

2.

Complete Genome Sequence of the Cyanogenic Phosphate-Solubilizing Pseudomonas sp. Strain CCOS 191, a Close Relative of Pseudomonas mosselii.

Smits TH, Pothier JF, Ruinelli M, Blom J, Frasson D, Koechli C, Fabbri C, Brandl H, Duffy B, Sievers M.

Genome Announc. 2015 Jun 11;3(3). pii: e00616-15. doi: 10.1128/genomeA.00616-15.

3.

Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization.

Brankatschk K, Kamber T, Pothier JF, Duffy B, Smits TH.

Microb Biotechnol. 2014 Nov;7(6):528-44. doi: 10.1111/1751-7915.12104. Epub 2013 Dec 6.

4.

Comparative RNA-seq analysis of early-infected peach leaves by the invasive phytopathogen Xanthomonas arboricola pv. pruni.

Socquet-Juglard D, Kamber T, Pothier JF, Christen D, Gessler C, Duffy B, Patocchi A.

PLoS One. 2013;8(1):e54196. doi: 10.1371/journal.pone.0054196. Epub 2013 Jan 14.

5.

Conveniently pre-tagged and pre-packaged: extended molecular identification and metagenomics using complete metazoan mitochondrial genomes.

Dettai A, Gallut C, Brouillet S, Pothier J, Lecointre G, Debruyne R.

PLoS One. 2012;7(12):e51263. doi: 10.1371/journal.pone.0051263. Epub 2012 Dec 14.

6.

Automatic classification of protein structures relying on similarities between alignments.

Santini G, Soldano H, Pothier J.

BMC Bioinformatics. 2012 Sep 14;13:233. doi: 10.1186/1471-2105-13-233.

7.

Type three effector gene distribution and sequence analysis provide new insights into the pathogenicity of plant-pathogenic Xanthomonas arboricola.

Hajri A, Pothier JF, Fischer-Le Saux M, Bonneau S, Poussier S, Boureau T, Duffy B, Manceau C.

Appl Environ Microbiol. 2012 Jan;78(2):371-84. doi: 10.1128/AEM.06119-11. Epub 2011 Nov 18.

8.

Swelfe: a detector of internal repeats in sequences and structures.

Abraham AL, Rocha EP, Pothier J.

Bioinformatics. 2008 Jul 1;24(13):1536-7. doi: 10.1093/bioinformatics/btn234. Epub 2008 May 16.

9.

RPBS: a web resource for structural bioinformatics.

Alland C, Moreews F, Boens D, Carpentier M, Chiusa S, Lonquety M, Renault N, Wong Y, Cantalloube H, Chomilier J, Hochez J, Pothier J, Villoutreix BO, Zagury JF, Tufféry P.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W44-9.

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