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Items: 1 to 20 of 52

1.

An Evaluation of Function of Multicopy Noncoding RNAs in Mammals Using ENCODE/FANTOM Data and Comparative Genomics.

Hoeppner MP, Denisenko E, Gardner PP, Schmeier S, Poole AM.

Mol Biol Evol. 2018 Jun 1;35(6):1451-1462. doi: 10.1093/molbev/msy046.

2.

Nuclear Pore-Like Structures in a Compartmentalized Bacterium.

Sagulenko E, Nouwens A, Webb RI, Green K, Yee B, Morgan G, Leis A, Lee KC, Butler MK, Chia N, Pham UT, Lindgreen S, Catchpole R, Poole AM, Fuerst JA.

PLoS One. 2017 Feb 1;12(2):e0169432. doi: 10.1371/journal.pone.0169432. eCollection 2017.

3.

Avoidance of stochastic RNA interactions can be harnessed to control protein expression levels in bacteria and archaea.

Umu SU, Poole AM, Dobson RC, Gardner PP.

Elife. 2016 Sep 20;5. pii: e13479. doi: 10.7554/eLife.13479.

4.

Does the Ribosome Challenge our Understanding of the RNA World?

Poole AM, Jeffares DC, Hoeppner MP, Penny D.

J Mol Evol. 2016 Jan;82(1):1-4. No abstract available.

PMID:
27148607
5.

Positive Selection or Free to Vary? Assessing the Functional Significance of Sequence Change Using Molecular Dynamics.

Allison JR, Lechner M, Hoeppner MP, Poole AM.

PLoS One. 2016 Feb 12;11(2):e0147619. doi: 10.1371/journal.pone.0147619. eCollection 2016.

6.

Does the Ribosome Challenge our Understanding of the RNA World?

Poole AM, Jeffares DC, Hoeppner MP, Penny D.

J Mol Evol. 2016 Jan;82(1):1-4. doi: 10.1007/s00239-015-9720-x. Epub 2015 Nov 18.

PMID:
26582049
7.

The evolution of early cellular systems viewed through the lens of biological interactions.

Poole AM, Lundin D, Rytkönen KT.

Front Microbiol. 2015 Oct 19;6:1144. doi: 10.3389/fmicb.2015.01144. eCollection 2015.

8.

The case for an early biological origin of DNA.

Poole AM, Horinouchi N, Catchpole RJ, Si D, Hibi M, Tanaka K, Ogawa J.

J Mol Evol. 2014 Dec;79(5-6):204-12. doi: 10.1007/s00239-014-9656-6. Epub 2014 Nov 26.

9.

Antibiotic genes spread far and wide.

Catchpole RJ, Poole AM.

Elife. 2014 Nov 25;3. doi: 10.7554/eLife.05244. No abstract available.

10.

Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling.

Lindgreen S, Umu SU, Lai AS, Eldai H, Liu W, McGimpsey S, Wheeler NE, Biggs PJ, Thomson NR, Barquist L, Poole AM, Gardner PP.

PLoS Comput Biol. 2014 Oct 30;10(10):e1003907. doi: 10.1371/journal.pcbi.1003907. eCollection 2014 Oct.

11.

Eukaryotic origins: How and when was the mitochondrion acquired?

Poole AM, Gribaldo S.

Cold Spring Harb Perspect Biol. 2014 Jul 18;6(12):a015990. doi: 10.1101/cshperspect.a015990. Review.

12.

Human-assisted spread of a maladaptive behavior in a critically endangered bird.

Massaro M, Sainudiin R, Merton D, Briskie JV, Poole AM, Hale ML.

PLoS One. 2013 Dec 9;8(12):e79066. doi: 10.1371/journal.pone.0079066. eCollection 2013.

13.

Bacterial natural transformation by highly fragmented and damaged DNA.

Overballe-Petersen S, Harms K, Orlando LA, Mayar JV, Rasmussen S, Dahl TW, Rosing MT, Poole AM, Sicheritz-Ponten T, Brunak S, Inselmann S, de Vries J, Wackernagel W, Pybus OG, Nielsen R, Johnsen PJ, Nielsen KM, Willerslev E.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19860-5. doi: 10.1073/pnas.1315278110. Epub 2013 Nov 18.

14.

A metagenomics transect into the deepest point of the Baltic Sea reveals clear stratification of microbial functional capacities.

Thureborn P, Lundin D, Plathan J, Poole AM, Sjöberg BM, Sjöling S.

PLoS One. 2013 Sep 23;8(9):e74983. doi: 10.1371/journal.pone.0074983. eCollection 2013.

15.

Evolutionary history of the TBP-domain superfamily.

Brindefalk B, Dessailly BH, Yeats C, Orengo C, Werner F, Poole AM.

Nucleic Acids Res. 2013 Mar 1;41(5):2832-45. doi: 10.1093/nar/gkt045. Epub 2013 Feb 1.

16.

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.

Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJ, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Höppner MP, Ishida K, Kim E, Kořený L, Kroth PG, Liu Y, Malik SB, Maier UG, McRose D, Mock T, Neilson JA, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM.

Nature. 2012 Dec 6;492(7427):59-65. doi: 10.1038/nature11681. Epub 2012 Nov 28.

PMID:
23201678
17.

Comparative analysis of RNA families reveals distinct repertoires for each domain of life.

Hoeppner MP, Gardner PP, Poole AM.

PLoS Comput Biol. 2012;8(11):e1002752. doi: 10.1371/journal.pcbi.1002752. Epub 2012 Nov 1.

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'Ecosystomics': ecology by sequencer.

Poole AM, Stouffer DB, Tylianakis JM.

Trends Ecol Evol. 2012 Jun;27(6):309-10. doi: 10.1016/j.tree.2012.03.008. Epub 2012 Apr 24. No abstract available.

PMID:
22537669

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