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Items: 1 to 20 of 156

1.

Toward standard practices for sharing computer code and programs in neuroscience.

Eglen SJ, Marwick B, Halchenko YO, Hanke M, Sufi S, Gleeson P, Silver RA, Davison AP, Lanyon L, Abrams M, Wachtler T, Willshaw DJ, Pouzat C, Poline JB.

Nat Neurosci. 2017 May 25;20(6):770-773. doi: 10.1038/nn.4550. No abstract available.

PMID:
28542156
2.

Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group.

BRAINS (Brain Imaging in Normal Subjects) Expert Working Group, Shenkin SD, Pernet C, Nichols TE, Poline JB, Matthews PM, van der Lugt A, Mackay C, Lanyon L, Mazoyer B, Boardman JP, Thompson PM, Fox N, Marcus DS, Sheikh A, Cox SR, Anblagan D, Job DE, Dickie DA, Rodriguez D, Wardlaw JM.

Neuroimage. 2017 Jun;153:399-409. doi: 10.1016/j.neuroimage.2017.02.030. Epub 2017 Feb 14.

PMID:
28232121
3.

Best practices in data analysis and sharing in neuroimaging using MRI.

Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BT.

Nat Neurosci. 2017 Feb 23;20(3):299-303. doi: 10.1038/nn.4500.

PMID:
28230846
4.

Influences of Age, Sex, and Moderate Alcohol Drinking on the Intrinsic Functional Architecture of Adolescent Brains.

Müller-Oehring EM, Kwon D, Nagel BJ, Sullivan EV, Chu W, Rohlfing T, Prouty D, Nichols BN, Poline JB, Tapert SF, Brown SA, Cummins K, Brumback T, Colrain IM, Baker FC, De Bellis MD, Voyvodic JT, Clark DB, Pfefferbaum A, Pohl KM.

Cereb Cortex. 2017 Feb 7:1-15. doi: 10.1093/cercor/bhx014. [Epub ahead of print]

PMID:
28168274
5.

Scanning the horizon: towards transparent and reproducible neuroimaging research.

Poldrack RA, Baker CI, Durnez J, Gorgolewski KJ, Matthews PM, Munafò MR, Nichols TE, Poline JB, Vul E, Yarkoni T.

Nat Rev Neurosci. 2017 Feb;18(2):115-126. doi: 10.1038/nrn.2016.167. Epub 2017 Jan 5. Review.

PMID:
28053326
6.

Sharing brain mapping statistical results with the neuroimaging data model.

Maumet C, Auer T, Bowring A, Chen G, Das S, Flandin G, Ghosh S, Glatard T, Gorgolewski KJ, Helmer KG, Jenkinson M, Keator DB, Nichols BN, Poline JB, Reynolds R, Sochat V, Turner J, Nichols TE.

Sci Data. 2016 Dec 6;3:160102. doi: 10.1038/sdata.2016.102.

7.

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.

Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, Maumet C, Nichols BN, Nichols TE, Pellman J, Poline JB, Rokem A, Schaefer G, Sochat V, Triplett W, Turner JA, Varoquaux G, Poldrack RA.

Sci Data. 2016 Jun 21;3:160044. doi: 10.1038/sdata.2016.44.

8.

Brainhack: a collaborative workshop for the open neuroscience community.

Cameron Craddock R, S Margulies D, Bellec P, Nolan Nichols B, Alcauter S, A Barrios F, Burnod Y, J Cannistraci C, Cohen-Adad J, De Leener B, Dery S, Downar J, Dunlop K, R Franco A, Seligman Froehlich C, J Gerber A, S Ghosh S, J Grabowski T, Hill S, Sólon Heinsfeld A, Matthew Hutchison R, Kundu P, R Laird A, Liew SL, J Lurie D, G McLaren D, Meneguzzi F, Mennes M, Mesmoudi S, O'Connor D, H Pasaye E, Peltier S, Poline JB, Prasad G, Fraga Pereira R, Quirion PO, Rokem A, S Saad Z, Shi Y, C Strother S, Toro R, Q Uddin L, D Van Horn J, W Van Meter J, C Welsh R, Xu T.

Gigascience. 2016 Mar 31;5:16. doi: 10.1186/s13742-016-0121-x. eCollection 2016. Review.

9.

Neural basis of reward anticipation and its genetic determinants.

Jia T, Macare C, Desrivières S, Gonzalez DA, Tao C, Ji X, Ruggeri B, Nees F, Banaschewski T, Barker GJ, Bokde AL, Bromberg U, Büchel C, Conrod PJ, Dove R, Frouin V, Gallinat J, Garavan H, Gowland PA, Heinz A, Ittermann B, Lathrop M, Lemaitre H, Martinot JL, Paus T, Pausova Z, Poline JB, Rietschel M, Robbins T, Smolka MN, Müller CP, Feng J, Rothenfluh A, Flor H, Schumann G; IMAGEN Consortium.

Proc Natl Acad Sci U S A. 2016 Apr 5;113(14):3879-84. doi: 10.1073/pnas.1503252113. Epub 2016 Mar 21.

10.

Transport on Riemannian Manifold for Connectivity-Based Brain Decoding.

Ng B, Varoquaux G, Poline JB, Greicius M, Thirion B.

IEEE Trans Med Imaging. 2016 Jan;35(1):208-16. doi: 10.1109/TMI.2015.2463723. Epub 2015 Aug 3.

PMID:
26259016
11.

Bootstrapped Permutation Test for Multiresponse Inference on Brain Behavior Associations.

Ng B, Poline JB, Thirion B, Greicius M; IMAGEN Consortium.

Inf Process Med Imaging. 2015;24:113-24.

12.

Ongoing dynamics in large-scale functional connectivity predict perception.

Sadaghiani S, Poline JB, Kleinschmidt A, D'Esposito M.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8463-8. doi: 10.1073/pnas.1420687112. Epub 2015 Jun 23.

13.

BRAIN NETWORKS. Correlated gene expression supports synchronous activity in brain networks.

Richiardi J, Altmann A, Milazzo AC, Chang C, Chakravarty MM, Banaschewski T, Barker GJ, Bokde AL, Bromberg U, Büchel C, Conrod P, Fauth-Bühler M, Flor H, Frouin V, Gallinat J, Garavan H, Gowland P, Heinz A, Lemaître H, Mann KF, Martinot JL, Nees F, Paus T, Pausova Z, Rietschel M, Robbins TW, Smolka MN, Spanagel R, Ströhle A, Schumann G, Hawrylycz M, Poline JB, Greicius MD; IMAGEN consortium.

Science. 2015 Jun 12;348(6240):1241-4. doi: 10.1126/science.1255905. Epub 2015 Jun 11.

14.

Orthogonalization of regressors in FMRI models.

Mumford JA, Poline JB, Poldrack RA.

PLoS One. 2015 Apr 28;10(4):e0126255. doi: 10.1371/journal.pone.0126255. eCollection 2015.

15.

NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain.

Gorgolewski KJ, Varoquaux G, Rivera G, Schwarz Y, Ghosh SS, Maumet C, Sochat VV, Nichols TE, Poldrack RA, Poline JB, Yarkoni T, Margulies DS.

Front Neuroinform. 2015 Apr 10;9:8. doi: 10.3389/fninf.2015.00008. eCollection 2015.

16.

NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain.

Gorgolewski KJ, Varoquaux G, Rivera G, Schwartz Y, Sochat VV, Ghosh SS, Maumet C, Nichols TE, Poline JB, Yarkoni T, Margulies DS, Poldrack RA.

Neuroimage. 2016 Jan 1;124(Pt B):1242-4. doi: 10.1016/j.neuroimage.2015.04.016. Epub 2015 Apr 11.

17.

Improving functional magnetic resonance imaging reproducibility.

Pernet C, Poline JB.

Gigascience. 2015 Mar 31;4:15. doi: 10.1186/s13742-015-0055-8. eCollection 2015.

18.

Resilience and corpus callosum microstructure in adolescence.

Galinowski A, Miranda R, Lemaitre H, Paillère Martinot ML, Artiges E, Vulser H, Goodman R, Penttilä J, Struve M, Barbot A, Fadai T, Poustka L, Conrod P, Banaschewski T, Barker GJ, Bokde A, Bromberg U, Büchel C, Flor H, Gallinat J, Garavan H, Heinz A, Ittermann B, Kappel V, Lawrence C, Loth E, Mann K, Nees F, Paus T, Pausova Z, Poline JB, Rietschel M, Robbins TW, Smolka M, Schumann G, Martinot JL; IMAGEN Consortium.

Psychol Med. 2015 Aug;45(11):2285-94. doi: 10.1017/S0033291715000239. Epub 2015 Mar 30.

PMID:
25817177
19.

Robust regression for large-scale neuroimaging studies.

Fritsch V, Da Mota B, Loth E, Varoquaux G, Banaschewski T, Barker GJ, Bokde AL, Brühl R, Butzek B, Conrod P, Flor H, Garavan H, Lemaitre H, Mann K, Nees F, Paus T, Schad DJ, Schümann G, Frouin V, Poline JB, Thirion B; IMAGEN consortium.

Neuroimage. 2015 May 1;111:431-41. doi: 10.1016/j.neuroimage.2015.02.048. Epub 2015 Feb 28.

PMID:
25731989
20.

The publication and reproducibility challenges of shared data.

Poldrack RA, Poline JB.

Trends Cogn Sci. 2015 Feb;19(2):59-61. doi: 10.1016/j.tics.2014.11.008. Epub 2014 Dec 17.

PMID:
25532702

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