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Items: 1 to 20 of 27

1.

ToNER: A tool for identifying nucleotide enrichment signals in feature-enriched RNA-seq data.

Promworn Y, Kaewprommal P, Shaw PJ, Intarapanich A, Tongsima S, Piriyapongsa J.

PLoS One. 2017 May 25;12(5):e0178483. doi: 10.1371/journal.pone.0178483. eCollection 2017.

2.

Evolutionary and epidemiological analyses based on spike genes of porcine epidemic diarrhea virus circulating in Thailand in 2008-2015.

Stott CJ, Temeeyasen G, Tripipat T, Kaewprommal P, Tantituvanont A, Piriyapongsa J, Nilubol D.

Infect Genet Evol. 2017 Jun;50:70-76. doi: 10.1016/j.meegid.2017.02.014. Epub 2017 Feb 21.

PMID:
28235643
3.

The genetic diversity and complete genome analysis of two novel porcine deltacoronavirus isolates in Thailand in 2015.

Lorsirigool A, Saeng-Chuto K, Madapong A, Temeeyasen G, Tripipat T, Kaewprommal P, Tantituvanont A, Piriyapongsa J, Nilubol D.

Virus Genes. 2017 Apr;53(2):240-248. doi: 10.1007/s11262-016-1413-z. Epub 2016 Dec 22.

PMID:
28005234
4.

Different Lineage of Porcine Deltacoronavirus in Thailand, Vietnam and Lao PDR in 2015.

Saeng-Chuto K, Lorsirigool A, Temeeyasen G, Vui DT, Stott CJ, Madapong A, Tripipat T, Wegner M, Intrakamhaeng M, Chongcharoen W, Tantituvanont A, Kaewprommal P, Piriyapongsa J, Nilubol D.

Transbound Emerg Dis. 2017 Feb;64(1):3-10. doi: 10.1111/tbed.12585. Epub 2016 Oct 7.

PMID:
27718337
5.

Full-length genome analysis of two genetically distinct variants of porcine epidemic diarrhea virus in Thailand.

Cheun-Arom T, Temeeyasen G, Tripipat T, Kaewprommal P, Piriyapongsa J, Sukrong S, Chongcharoen W, Tantituvanont A, Nilubol D.

Infect Genet Evol. 2016 Oct;44:114-21. doi: 10.1016/j.meegid.2016.06.046. Epub 2016 Jun 25.

PMID:
27353184
6.

Estimating mRNA lengths from Plasmodium falciparum genes by Virtual Northern RNA-seq analysis.

Shaw PJ, Kaewprommal P, Piriyapongsa J, Wongsombat C, Yuthavong Y, Kamchonwongpaisan S.

Int J Parasitol. 2016 Jan;46(1):7-12. doi: 10.1016/j.ijpara.2015.09.007. Epub 2015 Nov 10.

PMID:
26548960
7.

Plasmodium parasites mount an arrest response to dihydroartemisinin, as revealed by whole transcriptome shotgun sequencing (RNA-seq) and microarray study.

Shaw PJ, Chaotheing S, Kaewprommal P, Piriyapongsa J, Wongsombat C, Suwannakitti N, Koonyosying P, Uthaipibull C, Yuthavong Y, Kamchonwongpaisan S.

BMC Genomics. 2015 Oct 21;16:830. doi: 10.1186/s12864-015-2040-0.

8.

Dynamics and evolution of highly pathogenic porcine reproductive and respiratory syndrome virus following its introduction into a herd concurrently infected with both types 1 and 2.

Chaikhumwang P, Tantituvanont A, Tripipat T, Tipsombatboon P, Piriyapongsa J, Nilubol D.

Infect Genet Evol. 2015 Mar;30:164-74. doi: 10.1016/j.meegid.2014.12.025. Epub 2014 Dec 31.

PMID:
25557456
9.

microPIR2: a comprehensive database for human-mouse comparative study of microRNA-promoter interactions.

Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S.

Database (Oxford). 2014 Nov 25;2014:bau115. doi: 10.1093/database/bau115. Print 2014.

10.

Identification of a tumor-suppressive human-specific microRNA within the FHIT tumor-suppressor gene.

Hu B, Ying X, Wang J, Piriyapongsa J, Jordan IK, Sheng J, Yu F, Zhao P, Li Y, Wang H, Ng WL, Hu S, Wang X, Wang C, Zheng X, Li W, Curran WJ, Wang Y.

Cancer Res. 2014 Apr 15;74(8):2283-94. doi: 10.1158/0008-5472.CAN-13-3279. Epub 2014 Feb 20.

11.

Genetic diversity of ORF3 and spike genes of porcine epidemic diarrhea virus in Thailand.

Temeeyasen G, Srijangwad A, Tripipat T, Tipsombatboon P, Piriyapongsa J, Phoolcharoen W, Chuanasa T, Tantituvanont A, Nilubol D.

Infect Genet Evol. 2014 Jan;21:205-13. doi: 10.1016/j.meegid.2013.11.001. Epub 2013 Nov 26.

PMID:
24291225
12.

Dynamics and evolution of porcine reproductive and respiratory syndrome virus (PRRSV) ORF5 following modified live PRRSV vaccination in a PRRSV-infected herd.

Nilubol D, Tripipat T, Hoonsuwan T, Tipsombatboon P, Piriyapongsa J.

Arch Virol. 2014 Jan;159(1):17-27. doi: 10.1007/s00705-013-1781-9. Epub 2013 Jul 13.

PMID:
23851653
13.

iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies.

Piriyapongsa J, Ngamphiw C, Intarapanich A, Kulawonganunchai S, Assawamakin A, Bootchai C, Shaw PJ, Tongsima S.

BMC Genomics. 2012;13 Suppl 7:S2. doi: 10.1186/1471-2164-13-S7-S2. Epub 2012 Dec 13.

14.

Genetic diversity of the ORF5 gene of porcine reproductive and respiratory syndrome virus (PRRSV) genotypes I and II in Thailand.

Nilubol D, Tripipat T, Hoonsuwan T, Tipsombatboon P, Piriyapongsa J.

Arch Virol. 2013 May;158(5):943-53. doi: 10.1007/s00705-012-1573-7. Epub 2012 Dec 12.

PMID:
23232748
15.

microPIR: an integrated database of microRNA target sites within human promoter sequences.

Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S.

PLoS One. 2012;7(3):e33888. doi: 10.1371/journal.pone.0033888. Epub 2012 Mar 16.

16.

Transcription factor binding sites are highly enriched within microRNA precursor sequences.

Piriyapongsa J, Jordan IK, Conley AB, Ronan T, Smalheiser NR.

Biol Direct. 2011 Dec 2;6:61. doi: 10.1186/1745-6150-6-61.

17.

Comparative view of in silico DNA sequencing analysis tools.

Tongsima S, Assawamakin A, Piriyapongsa J, Shaw PJ.

Methods Mol Biol. 2011;760:207-21. doi: 10.1007/978-1-61779-176-5_13.

PMID:
21779999
18.

Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and structure.

Limpiti T, Intarapanich A, Assawamakin A, Shaw PJ, Wangkumhang P, Piriyapongsa J, Ngamphiw C, Tongsima S.

BMC Bioinformatics. 2011 Jun 23;12:255. doi: 10.1186/1471-2105-12-255.

19.

Hypomethylation of intragenic LINE-1 represses transcription in cancer cells through AGO2.

Aporntewan C, Phokaew C, Piriyapongsa J, Ngamphiw C, Ittiwut C, Tongsima S, Mutirangura A.

PLoS One. 2011 Mar 15;6(3):e17934. doi: 10.1371/journal.pone.0017934.

20.

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.

Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G, Tongsima S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S4. doi: 10.1186/1471-2164-10-S3-S4.

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