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Items: 8

1.

Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets.

Permina EA, Medvedeva YA, Baeck PM, Hegde SR, Mande SC, Makeev VJ.

J Biomol Struct Dyn. 2013;31(1):115-24. doi: 10.1080/07391102.2012.691368. Epub 2012 Jul 18.

PMID:
22803819
2.

[Using the operonic gene pairs for establishing the treshold for correlation coefficient of differently expressed genes].

Hedge Sh, Klimova EIu, Mande Sh, Medvedeva IuA, Makeev VIu, Permina EA.

Biofizika. 2011 Nov-Dec;56(6):1062-4. Russian.

PMID:
22279749
3.

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.

Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S3. doi: 10.1186/1471-2164-12-S1-S3.

4.

[Taxon-specific regulation of SOS-response in gamma-proteobacteria].

Sycheva LV, Permina EA, Gel'fand MS.

Mol Biol (Mosk). 2007 Sep-Oct;41(5):908-17. Russian.

PMID:
18240573
5.

Global transcriptional response of Nitrosomonas europaea to chloroform and chloromethane.

Gvakharia BO, Permina EA, Gelfand MS, Bottomley PJ, Sayavedra-Soto LA, Arp DJ.

Appl Environ Microbiol. 2007 May;73(10):3440-5. Epub 2007 Mar 16.

6.

Comparative genomics of regulation of heavy metal resistance in Eubacteria.

Permina EA, Kazakov AE, Kalinina OV, Gelfand MS.

BMC Microbiol. 2006 Jun 5;6:49.

7.

Heat shock (sigma32 and HrcA/CIRCE) regulons in beta-, gamma- and epsilon-proteobacteria.

Permina EA, Gelfand MS.

J Mol Microbiol Biotechnol. 2003;6(3-4):174-81.

PMID:
15153770
8.

Damage-repair error-prone polymerases of eubacteria: association with mobile genome elements.

Permina EA, Mironov AA, Gelfand MS.

Gene. 2002 Jun 26;293(1-2):133-40.

PMID:
12137951

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