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Items: 15


Whole-genome scan reveals significant non-additive effects for sire conception rate in Holstein cattle.

Nicolini P, Amorín R, Han Y, Peñagaricano F.

BMC Genet. 2018 Feb 27;19(1):14. doi: 10.1186/s12863-018-0600-4.


Integrative analysis of methylomic and transcriptomic data in fetal sheep muscle tissues in response to maternal diet during pregnancy.

Namous H, Peñagaricano F, Del Corvo M, Capra E, Thomas DL, Stella A, Williams JL, Marsan PA, Khatib H.

BMC Genomics. 2018 Feb 6;19(1):123. doi: 10.1186/s12864-018-4509-0.


Unravelling the genomic architecture of bull fertility in Holstein cattle.

Han Y, Peñagaricano F.

BMC Genet. 2016 Nov 14;17(1):143.


MeSH-Informed Enrichment Analysis and MeSH-Guided Semantic Similarity Among Functional Terms and Gene Products in Chicken.

Morota G, Beissinger TM, Peñagaricano F.

G3 (Bethesda). 2016 Aug 9;6(8):2447-53. doi: 10.1534/g3.116.031096.


Transcriptomic Analysis of the Mouse Mammary Gland Reveals New Insights for the Role of Serotonin in Lactation.

Laporta J, Peñagaricano F, Hernandez LL.

PLoS One. 2015 Oct 15;10(10):e0140425. doi: 10.1371/journal.pone.0140425. eCollection 2015.


Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data.

Peñagaricano F, Valente BD, Steibel JP, Bates RO, Ernst CW, Khatib H, Rosa GJ.

BMC Syst Biol. 2015 Sep 16;9:58. doi: 10.1186/s12918-015-0207-6.


An application of MeSH enrichment analysis in livestock.

Morota G, Peñagaricano F, Petersen JL, Ciobanu DC, Tsuyuzaki K, Nikaido I.

Anim Genet. 2015 Aug;46(4):381-7. doi: 10.1111/age.12307. Epub 2015 Jun 2.


The Causal Meaning of Genomic Predictors and How It Affects Construction and Comparison of Genome-Enabled Selection Models.

Valente BD, Morota G, Peñagaricano F, Gianola D, Weigel K, Rosa GJ.

Genetics. 2015 Jun;200(2):483-94. doi: 10.1534/genetics.114.169490. Epub 2015 Apr 23.


Maternal nutrition induces gene expression changes in fetal muscle and adipose tissues in sheep.

Peñagaricano F, Wang X, Rosa GJ, Radunz AE, Khatib H.

BMC Genomics. 2014 Nov 28;15:1034. doi: 10.1186/1471-2164-15-1034.


Insights into the maize pan-genome and pan-transcriptome.

Hirsch CN, Foerster JM, Johnson JM, Sekhon RS, Muttoni G, Vaillancourt B, Peñagaricano F, Lindquist E, Pedraza MA, Barry K, de Leon N, Kaeppler SM, Buell CR.

Plant Cell. 2014 Jan;26(1):121-35. doi: 10.1105/tpc.113.119982. Epub 2014 Jan 31.


Effect of maternal methionine supplementation on the transcriptome of bovine preimplantation embryos.

Peñagaricano F, Souza AH, Carvalho PD, Driver AM, Gambra R, Kropp J, Hackbart KS, Luchini D, Shaver RD, Wiltbank MC, Khatib H.

PLoS One. 2013 Aug 21;8(8):e72302. doi: 10.1371/journal.pone.0072302. eCollection 2013.


Knockdown of CDKN1C (p57(kip2)) and PHLDA2 results in developmental changes in bovine pre-implantation embryos.

Driver AM, Huang W, Kropp J, Peñagaricano F, Khatib H.

PLoS One. 2013 Jul 22;8(7):e69490. doi: 10.1371/journal.pone.0069490. Print 2013.


Maternal Diet during Pregnancy Induces Gene Expression and DNA Methylation Changes in Fetal Tissues in Sheep.

Lan X, Cretney EC, Kropp J, Khateeb K, Berg MA, Peñagaricano F, Magness R, Radunz AE, Khatib H.

Front Genet. 2013 Apr 5;4:49. doi: 10.3389/fgene.2013.00049. eCollection 2013.


Inferring quantitative trait pathways associated with bull fertility from a genome-wide association study.

Peñagaricano F, Weigel KA, Rosa GJ, Khatib H.

Front Genet. 2013 Jan 11;3:307. doi: 10.3389/fgene.2012.00307. eCollection 2012.


RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo- and in vitro-derived bovine blastocysts.

Driver AM, Peñagaricano F, Huang W, Ahmad KR, Hackbart KS, Wiltbank MC, Khatib H.

BMC Genomics. 2012 Mar 28;13:118. doi: 10.1186/1471-2164-13-118.

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