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Items: 1 to 20 of 22


Whole Reproductive System Non-Negative Matrix Factorization Mass Spectrometry Imaging of an Early-Stage Ovarian Cancer Mouse Model.

Paine MR, Kim J, Bennett RV, Parry RM, Gaul DA, Wang MD, Matzuk MM, Fernández FM.

PLoS One. 2016 May 9;11(5):e0154837. doi: 10.1371/journal.pone.0154837. eCollection 2016.


Multivariate hypergeometric similarity measure.

Kaddi CD, Parry RM, Wang MD.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov-Dec;10(6):1505-16. doi: 10.1109/TCBB.2013.28.


omniSpect: an open MATLAB-based tool for visualization and analysis of matrix-assisted laser desorption/ionization and desorption electrospray ionization mass spectrometry images.

Parry RM, Galhena AS, Gamage CM, Bennett RV, Wang MD, Fernández FM.

J Am Soc Mass Spectrom. 2013 Apr;24(4):646-9. doi: 10.1007/s13361-012-0572-y. Epub 2013 Feb 26.


A fast least-squares algorithm for population inference.

Parry RM, Wang MD.

BMC Bioinformatics. 2013 Jan 23;14:28. doi: 10.1186/1471-2105-14-28.


Seaweed allelopathy against coral: surface distribution of a seaweed secondary metabolite by imaging mass spectrometry.

Andras TD, Alexander TS, Gahlena A, Parry RM, Fernandez FM, Kubanek J, Wang MD, Hay ME.

J Chem Ecol. 2012 Oct;38(10):1203-14. doi: 10.1007/s10886-012-0204-9. Epub 2012 Oct 30.


Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems.

Parry RM, Phan JH, Wang MD.

BMC Bioinformatics. 2012 Mar 21;13 Suppl 3:S7. doi: 10.1186/1471-2105-13-S3-S7.


An analysis of scale and rotation invariance in the bag-of-features method for histopathological image classification.

Raza SH, Parry RM, Moffitt RA, Young AN, Wang MD.

Med Image Comput Comput Assist Interv. 2011;14(Pt 3):66-74.


caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts.

Moffitt RA, Yin-Goen Q, Stokes TH, Parry RM, Torrance JH, Phan JH, Young AN, Wang MD.

BMC Bioinformatics. 2011 Sep 29;12:383. doi: 10.1186/1471-2105-12-383.


The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Huang J, Jensen RV, Jiang R, Johnson CD, Jurman G, Kahlert Y, Khuder SA, Kohl M, Li J, Li L, Li M, Li QZ, Li S, Li Z, Liu J, Liu Y, Liu Z, Meng L, Madera M, Martinez-Murillo F, Medina I, Meehan J, Miclaus K, Moffitt RA, Montaner D, Mukherjee P, Mulligan GJ, Neville P, Nikolskaya T, Ning B, Page GP, Parker J, Parry RM, Peng X, Peterson RL, Phan JH, Quanz B, Ren Y, Riccadonna S, Roter AH, Samuelson FW, Schumacher MM, Shambaugh JD, Shi Q, Shippy R, Si S, Smalter A, Sotiriou C, Soukup M, Staedtler F, Steiner G, Stokes TH, Sun Q, Tan PY, Tang R, Tezak Z, Thorn B, Tsyganova M, Turpaz Y, Vega SC, Visintainer R, von Frese J, Wang C, Wang E, Wang J, Wang W, Westermann F, Willey JC, Woods M, Wu S, Xiao N, Xu J, Xu L, Yang L, Zeng X, Zhang J, Zhang L, Zhang M, Zhao C, Puri RK, Scherf U, Tong W, Wolfinger RD; MAQC Consortium.

Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30.


k-Nearest neighbor models for microarray gene expression analysis and clinical outcome prediction.

Parry RM, Jones W, Stokes TH, Phan JH, Moffitt RA, Fang H, Shi L, Oberthuer A, Fischer M, Tong W, Wang MD.

Pharmacogenomics J. 2010 Aug;10(4):292-309. doi: 10.1038/tpj.2010.56.


Combining two-dimensional diffusion-ordered nuclear magnetic resonance spectroscopy, imaging desorption electrospray ionization mass spectrometry, and direct analysis in real-time mass spectrometry for the integral investigation of counterfeit pharmaceuticals.

Nyadong L, Harris GA, Balayssac S, Galhena AS, Malet-Martino M, Martino R, Parry RM, Wang MD, Fernández FM, Gilard V.

Anal Chem. 2009 Jun 15;81(12):4803-12. doi: 10.1021/ac900384j.


Desorption electrospray ionization mass spectrometry reveals surface-mediated antifungal chemical defense of a tropical seaweed.

Lane AL, Nyadong L, Galhena AS, Shearer TL, Stout EP, Parry RM, Kwasnik M, Wang MD, Hay ME, Fernandez FM, Kubanek J.

Proc Natl Acad Sci U S A. 2009 May 5;106(18):7314-9. doi: 10.1073/pnas.0812020106. Epub 2009 Apr 6.


Simple quantification of multiplexed quantum dot staining in clinical tissue samples.

Caldwell ML, Moffitt RA, Liu J, Parry RM, Sharma Y, Wang MD.

Conf Proc IEEE Eng Med Biol Soc. 2008;2008:1907-10. doi: 10.1109/IEMBS.2008.4649559.


The applications and limitations of genetic engineering--the ethical implications.

Parry RM.

Futures. 1975 Apr;7(2):169-73. No abstract available.


A spectroscopic study of bovine lactoferrin.

Brown EM, Parry RM Jr.

Biochemistry. 1974 Oct 22;13(22):4560-5. No abstract available.


Lactoferrin conformation and metal binding properties.

Parry RM Jr, Brown EM.

Adv Exp Med Biol. 1974;48(0):141-60. No abstract available.


Enzymes in bovine milk: a review.

Shahani KM, Herper WJ, Jensen RG, Parry RM Jr, Zittle CA.

J Dairy Sci. 1973 May;56(5):531-43. Review. No abstract available.


Location of kappa-casein in milk micelles.

Parry RM Jr, Carroll RJ.

Biochim Biophys Acta. 1969 Nov 11;194(1):138-50. No abstract available.


Isolation and characterization of human milk lysozyme.

Parry RM Jr, Chandan RC, Shahani KM.

Arch Biochem Biophys. 1969 Mar;130(1):59-65. No abstract available.


Rapid and sensitive assay for milk lipase.

Parry RM Jr, Chandan RC, Shahani KM.

J Dairy Sci. 1966 Apr;49(4):356-60. No abstract available.

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