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Items: 1 to 20 of 29

1.

Corrigendum: Trade-offs between driving nodes and time-to-control in complex networks.

Pequito S, Preciado VM, Barabási AL, Pappas GJ.

Sci Rep. 2017 Mar 9;7:43194. doi: 10.1038/srep43194. No abstract available.

2.

Trade-offs between driving nodes and time-to-control in complex networks.

Pequito S, Preciado VM, Barabási AL, Pappas GJ.

Sci Rep. 2017 Jan 5;7:39978. doi: 10.1038/srep39978.

3.

Transcriptome analyses of the Dof-like gene family in grapevine reveal its involvement in berry, flower and seed development.

da Silva DC, da Silveira Falavigna V, Fasoli M, Buffon V, Porto DD, Pappas GJ Jr, Pezzotti M, Pasquali G, Revers LF.

Hortic Res. 2016 Aug 31;3:16042. doi: 10.1038/hortres.2016.42. eCollection 2016.

4.

SNP discovery in common bean by restriction-associated DNA (RAD) sequencing for genetic diversity and population structure analysis.

Valdisser PA, Pappas GJ Jr, de Menezes IP, Müller BS, Pereira WJ, Narciso MG, Brondani C, Souza TL, Borba TC, Vianello RP.

Mol Genet Genomics. 2016 Jun;291(3):1277-91. doi: 10.1007/s00438-016-1182-3. Epub 2016 Mar 1.

PMID:
26932372
5.

Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes.

Vlasova A, Capella-Gutiérrez S, Rendón-Anaya M, Hernández-Oñate M, Minoche AE, Erb I, Câmara F, Prieto-Barja P, Corvelo A, Sanseverino W, Westergaard G, Dohm JC, Pappas GJ Jr, Saburido-Alvarez S, Kedra D, Gonzalez I, Cozzuto L, Gómez-Garrido J, Aguilar-Morón MA, Andreu N, Aguilar OM, Garcia-Mas J, Zehnsdorf M, Vázquez MP, Delgado-Salinas A, Delaye L, Lowy E, Mentaberry A, Vianello-Brondani RP, García JL, Alioto T, Sánchez F, Himmelbauer H, Santalla M, Notredame C, Gabaldón T, Herrera-Estrella A, Guigó R.

Genome Biol. 2016 Feb 25;17:32. doi: 10.1186/s13059-016-0883-6.

6.

Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae.

Pappas Mde C, Pappas GJ Jr, Grattapaglia D.

BMC Genomics. 2015 Dec 29;16:1113. doi: 10.1186/s12864-015-2322-6.

7.

Sugarcane giant borer transcriptome analysis and identification of genes related to digestion.

Fonseca FC, Firmino AA, de Macedo LL, Coelho RR, de Souza Júnior JD, Silva-Junior OB, Togawa RC, Pappas GJ Jr, de Góis LA, da Silva MC, Grossi-de-Sá MF.

PLoS One. 2015 Feb 23;10(2):e0118231. doi: 10.1371/journal.pone.0118231. eCollection 2015. Erratum in: PLoS One. 2015;10(4):e0123836. de Sousa Júnior, José Dijair Antonino [corrected to de Souza Júnior, José Dijair Antonino].

8.

The genome of Eucalyptus grandis.

Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, Hussey SG, Pinard D, van der Merwe K, Singh P, van Jaarsveld I, Silva-Junior OB, Togawa RC, Pappas MR, Faria DA, Sansaloni CP, Petroli CD, Yang X, Ranjan P, Tschaplinski TJ, Ye CY, Li T, Sterck L, Vanneste K, Murat F, Soler M, Clemente HS, Saidi N, Cassan-Wang H, Dunand C, Hefer CA, Bornberg-Bauer E, Kersting AR, Vining K, Amarasinghe V, Ranik M, Naithani S, Elser J, Boyd AE, Liston A, Spatafora JW, Dharmwardhana P, Raja R, Sullivan C, Romanel E, Alves-Ferreira M, Külheim C, Foley W, Carocha V, Paiva J, Kudrna D, Brommonschenkel SH, Pasquali G, Byrne M, Rigault P, Tibbits J, Spokevicius A, Jones RC, Steane DA, Vaillancourt RE, Potts BM, Joubert F, Barry K, Pappas GJ, Strauss SH, Jaiswal P, Grima-Pettenati J, Salse J, Van de Peer Y, Rokhsar DS, Schmutz J.

Nature. 2014 Jun 19;510(7505):356-62. doi: 10.1038/nature13308. Epub 2014 Jun 11.

PMID:
24919147
9.

Identification and Expression Profile of Two Putative Odorant-Binding Proteins from the Neotropical Brown Stink Bug, Euschistus heros (Fabricius) (Hemiptera: Pentatomidae).

Farias LR, Paula DP, Zhou JJ, Liu R, Pappas GJ Jr, Moraes MC, Laumann RA, Borges M, Birkett MA, Pickett JA, Field LM, Báo SN.

Neotrop Entomol. 2014 Apr;43(2):106-14. doi: 10.1007/s13744-013-0187-4. Epub 2014 Mar 6.

PMID:
27193516
10.

Identification of mycoparasitism-related genes against the phytopathogen Sclerotinia sclerotiorum through transcriptome and expression profile analysis in Trichoderma harzianum.

Steindorff AS, Ramada MH, Coelho AS, Miller RN, Pappas GJ Jr, Ulhoa CJ, Noronha EF.

BMC Genomics. 2014 Mar 18;15:204. doi: 10.1186/1471-2164-15-204.

11.

Transcription profile of soybean-root-knot nematode interaction reveals a key role of phythormones in the resistance reaction.

Beneventi MA, da Silva OB Jr, de Sá ME, Firmino AA, de Amorim RM, Albuquerque EV, da Silva MC, da Silva JP, Campos Mde A, Lopes MJ, Togawa RC, Pappas GJ Jr, Grossi-de-Sa MF.

BMC Genomics. 2013 May 10;14:322. doi: 10.1186/1471-2164-14-322.

12.

Development of expressed sequence tag and expressed sequence tag-simple sequence repeat marker resources for Musa acuminata.

Passos MA, de Oliveira Cruz V, Emediato FL, de Camargo Teixeira C, Souza MT Jr, Matsumoto T, Rennó Azevedo VC, Ferreira CF, Amorim EP, de Alencar Figueiredo LF, Martins NF, de Jesus Barbosa Cavalcante M, Baurens FC, da Silva OB Jr, Pappas GJ Jr, Pignolet L, Abadie C, Ciampi AY, Piffanelli P, Miller RN.

AoB Plants. 2012;2012:pls030. doi: 10.1093/aobpla/pls030. Epub 2012 Nov 26.

13.

Genomic characterization of DArT markers based on high-density linkage analysis and physical mapping to the Eucalyptus genome.

Petroli CD, Sansaloni CP, Carling J, Steane DA, Vaillancourt RE, Myburg AA, da Silva OB Jr, Pappas GJ Jr, Kilian A, Grattapaglia D.

PLoS One. 2012;7(9):e44684. doi: 10.1371/journal.pone.0044684. Epub 2012 Sep 11.

14.

Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees.

Resende MD, Resende MF Jr, Sansaloni CP, Petroli CD, Missiaggia AA, Aguiar AM, Abad JM, Takahashi EK, Rosado AM, Faria DA, Pappas GJ Jr, Kilian A, Grattapaglia D.

New Phytol. 2012 Apr;194(1):116-28. doi: 10.1111/j.1469-8137.2011.04038.x. Epub 2012 Feb 6.

15.

Identification of genes encoding hypothetical proteins in open-reading frame expressed sequence tags from mammalian stages of Trypanosoma cruzi.

Martins C, Reis-Cunha JL, Silva MN, Pereira EG, Pappas GJ Jr, Bartholomeu DC, Zingales B.

Genet Mol Res. 2011;10(3):1589-630. doi: 10.4238/vol10-3gmr1140.

16.

High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species.

Grattapaglia D, Silva-Junior OB, Kirst M, de Lima BM, Faria DA, Pappas GJ Jr.

BMC Plant Biol. 2011 Apr 14;11:65. doi: 10.1186/1471-2229-11-65.

17.

Characterization of novel microsatellite markers in Musa acuminata subsp. burmannicoides, var. Calcutta 4.

Miller RN, Passos MA, Menezes NN, Souza MT Jr, do Carmo Costa MM, Rennó Azevedo VC, Amorim EP, Pappas GJ Jr, Ciampi AY.

BMC Res Notes. 2010 May 27;3:148. doi: 10.1186/1756-0500-3-148.

18.

A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas.

Hippolyte I, Bakry F, Seguin M, Gardes L, Rivallan R, Risterucci AM, Jenny C, Perrier X, Carreel F, Argout X, Piffanelli P, Khan IA, Miller RN, Pappas GJ, Mbéguié-A-Mbéguié D, Matsumoto T, De Bernardinis V, Huttner E, Kilian A, Baurens FC, D'Hont A, Cote F, Courtois B, Glaszmann JC.

BMC Plant Biol. 2010 Apr 13;10:65. doi: 10.1186/1471-2229-10-65.

19.

A selected set of EST-derived microsatellites, polymorphic and transferable across 6 species of eucalyptus.

Faria DA, Mamani EM, Pappas MR, Pappas GJ Jr, Grattapaglia D.

J Hered. 2010 Jul-Aug;101(4):512-20. doi: 10.1093/jhered/esq024. Epub 2010 Mar 15.

PMID:
20231265
20.

Genetic network identification using convex programming.

Julius A, Zavlanos M, Boyd S, Pappas GJ.

IET Syst Biol. 2009 May;3(3):155-66. doi: 10.1049/iet-syb.2008.0130.

PMID:
19449976

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