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Items: 18

1.

Circulating miRNAs, isomiRs and small RNA clusters in human plasma and breast milk.

Rubio M, Bustamante M, Hernandez-Ferrer C, Fernandez-Orth D, Pantano L, Sarria Y, Piqué-Borras M, Vellve K, Agramunt S, Carreras R, Estivill X, Gonzalez JR, Mayor A.

PLoS One. 2018 Mar 5;13(3):e0193527. doi: 10.1371/journal.pone.0193527. eCollection 2018.

2.

Empirical comparison of reduced representation bisulfite sequencing and Infinium BeadChip reproducibility and coverage of DNA methylation in humans.

Carmona JJ, Accomando WP Jr, Binder AM, Hutchinson JN, Pantano L, Izzi B, Just AC, Lin X, Schwartz J, Vokonas PS, Amr SS, Baccarelli AA, Michels KB.

NPJ Genom Med. 2017 Apr 19;2:13. doi: 10.1038/s41525-017-0012-9. eCollection 2017.

3.

Viewing RNA-seq data on the entire human genome.

Weitz EM, Pantano L, Zhu J, Upton B, Busby B.

F1000Res. 2017 Apr 28;6:596. doi: 10.12688/f1000research.9762.1. eCollection 2017.

4.

Comparative analysis of LIN28-RNA binding sites identified at single nucleotide resolution.

Ransey E, Björkbom A, Lelyveld VS, Biecek P, Pantano L, Szostak JW, Sliz P.

RNA Biol. 2017 Dec 2;14(12):1756-1765. doi: 10.1080/15476286.2017.1356566. Epub 2017 Oct 9.

5.

Maintenance of macrophage transcriptional programs and intestinal homeostasis by epigenetic reader SP140.

Mehta S, Cronkite DA, Basavappa M, Saunders TL, Adiliaghdam F, Amatullah H, Morrison SA, Pagan JD, Anthony RM, Tonnerre P, Lauer GM, Lee JC, Digumarthi S, Pantano L, Ho Sui SJ, Ji F, Sadreyev R, Zhou C, Mullen AC, Kumar V, Li Y, Wijmenga C, Xavier RJ, Means TK, Jeffrey KL.

Sci Immunol. 2017 Mar 3;2(9). pii: eaag3160. doi: 10.1126/sciimmunol.aag3160. Epub 2017 Mar 3.

6.

Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives.

Daily K, Ho Sui SJ, Schriml LM, Dexheimer PJ, Salomonis N, Schroll R, Bush S, Keddache M, Mayhew C, Lotia S, Perumal TM, Dang K, Pantano L, Pico AR, Grassman E, Nordling D, Hide W, Hatzopoulos AK, Malik P, Cancelas JA, Lutzko C, Aronow BJ, Omberg L.

Sci Data. 2017 Mar 28;4:170030. doi: 10.1038/sdata.2017.30.

7.

Functional Impact and Evolution of a Novel Human Polymorphic Inversion That Disrupts a Gene and Creates a Fusion Transcript.

Puig M, Castellano D, Pantano L, Giner-Delgado C, Izquierdo D, Gayà-Vidal M, Lucas-Lledó JI, Esko T, Terao C, Matsuda F, Cáceres M.

PLoS Genet. 2015 Oct 1;11(10):e1005495. doi: 10.1371/journal.pgen.1005495. eCollection 2015 Oct.

8.

The small RNA content of human sperm reveals pseudogene-derived piRNAs complementary to protein-coding genes.

Pantano L, Jodar M, Bak M, Ballescà JL, Tommerup N, Oliva R, Vavouri T.

RNA. 2015 Jun;21(6):1085-95. doi: 10.1261/rna.046482.114. Epub 2015 Apr 22.

9.

InvFEST, a database integrating information of polymorphic inversions in the human genome.

Martínez-Fundichely A, Casillas S, Egea R, Ràmia M, Barbadilla A, Pantano L, Puig M, Cáceres M.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1027-32. doi: 10.1093/nar/gkt1122. Epub 2013 Nov 18.

10.

Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor.

Llorens F, Hummel M, Pantano L, Pastor X, Vivancos A, Castillo E, Mattlin H, Ferrer A, Ingham M, Noguera M, Kofler R, Dohm JC, Pluvinet R, Bayés M, Himmelbauer H, del Rio JA, Martí E, Sumoy L.

BMC Genomics. 2013 Jun 1;14:371. doi: 10.1186/1471-2164-14-371.

11.

A highly expressed miR-101 isomiR is a functional silencing small RNA.

Llorens F, Bañez-Coronel M, Pantano L, del Río JA, Ferrer I, Estivill X, Martí E.

BMC Genomics. 2013 Feb 15;14:104. doi: 10.1186/1471-2164-14-104.

12.

A pathogenic mechanism in Huntington's disease involves small CAG-repeated RNAs with neurotoxic activity.

Bañez-Coronel M, Porta S, Kagerbauer B, Mateu-Huertas E, Pantano L, Ferrer I, Guzmán M, Estivill X, Martí E.

PLoS Genet. 2012;8(2):e1002481. doi: 10.1371/journal.pgen.1002481. Epub 2012 Feb 23.

13.

A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing.

Martí E, Pantano L, Bañez-Coronel M, Llorens F, Miñones-Moyano E, Porta S, Sumoy L, Ferrer I, Estivill X.

Nucleic Acids Res. 2010 Nov;38(20):7219-35. doi: 10.1093/nar/gkq575. Epub 2010 Jun 30.

14.

SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells.

Pantano L, Estivill X, Martí E.

Nucleic Acids Res. 2010 Mar;38(5):e34. doi: 10.1093/nar/gkp1127. Epub 2009 Dec 11.

15.

Identification of copy number variants defining genomic differences among major human groups.

Armengol L, Villatoro S, González JR, Pantano L, García-Aragonés M, Rabionet R, Cáceres M, Estivill X.

PLoS One. 2009 Sep 30;4(9):e7230. doi: 10.1371/journal.pone.0007230.

16.

ProSeeK: a web server for MLPA probe design.

Pantano L, Armengol L, Villatoro S, Estivill X.

BMC Genomics. 2008 Nov 28;9:573. doi: 10.1186/1471-2164-9-573.

17.

Fibroblast-derived induced pluripotent stem cells show no common retroviral vector insertions.

Varas F, Stadtfeld M, de Andres-Aguayo L, Maherali N, di Tullio A, Pantano L, Notredame C, Hochedlinger K, Graf T.

Stem Cells. 2009 Feb;27(2):300-6. doi: 10.1634/stemcells.2008-0696.

18.

Genome assembly comparison identifies structural variants in the human genome.

Khaja R, Zhang J, MacDonald JR, He Y, Joseph-George AM, Wei J, Rafiq MA, Qian C, Shago M, Pantano L, Aburatani H, Jones K, Redon R, Hurles M, Armengol L, Estivill X, Mural RJ, Lee C, Scherer SW, Feuk L.

Nat Genet. 2006 Dec;38(12):1413-8. Epub 2006 Nov 22.

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