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Items: 14

1.

SASpy: a PyMOL plugin for manipulation and refinement of hybrid models against small angle X-ray scattering data.

Panjkovich A, Svergun DI.

Bioinformatics. 2016 Jul 1;32(13):2062-4. doi: 10.1093/bioinformatics/btw071. Epub 2016 Feb 28.

2.

Deciphering conformational transitions of proteins by small angle X-ray scattering and normal mode analysis.

Panjkovich A, Svergun DI.

Phys Chem Chem Phys. 2016 Feb 17;18(8):5707-19. doi: 10.1039/c5cp04540a.

PMID:
26611321
3.

DARA: a web server for rapid search of structural neighbours using solution small angle X-ray scattering data.

Kikhney AG, Panjkovich A, Sokolova AV, Svergun DI.

Bioinformatics. 2016 Feb 15;32(4):616-8. doi: 10.1093/bioinformatics/btv611. Epub 2015 Oct 25.

4.

Molecular determinants of magnesium-dependent synaptic plasticity at electrical synapses formed by connexin36.

Palacios-Prado N, Chapuis S, Panjkovich A, Fregeac J, Nagy JI, Bukauskas FF.

Nat Commun. 2014 Aug 19;5:4667. doi: 10.1038/ncomms5667.

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6.

PARS: a web server for the prediction of Protein Allosteric and Regulatory Sites.

Panjkovich A, Daura X.

Bioinformatics. 2014 May 1;30(9):1314-5. doi: 10.1093/bioinformatics/btu002. Epub 2014 Jan 9.

PMID:
24413526
7.

Exploiting protein flexibility to predict the location of allosteric sites.

Panjkovich A, Daura X.

BMC Bioinformatics. 2012 Oct 25;13:273. doi: 10.1186/1471-2105-13-273.

8.

A systematic study of the energetics involved in structural changes upon association and connectivity in protein interaction networks.

Stein A, Rueda M, Panjkovich A, Orozco M, Aloy P.

Structure. 2011 Jun 8;19(6):881-9. doi: 10.1016/j.str.2011.03.009.

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3did Update: domain-domain and peptide-mediated interactions of known 3D structure.

Stein A, Panjkovich A, Aloy P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D300-4. doi: 10.1093/nar/gkn690. Epub 2008 Oct 25.

12.

Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs.

Panjkovich A, Melo F, Marti-Renom MA.

Genome Biol. 2008 Apr 8;9(4):R68. doi: 10.1186/gb-2008-9-4-r68.

13.

dnaMATE: a consensus melting temperature prediction server for short DNA sequences.

Panjkovich A, Norambuena T, Melo F.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W570-2.

14.

Comparison of different melting temperature calculation methods for short DNA sequences.

Panjkovich A, Melo F.

Bioinformatics. 2005 Mar;21(6):711-22. Epub 2004 Oct 22.

PMID:
15501913

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