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Items: 18

1.

Insight into Potential Probiotic Markers Predicted in Lactobacillus pentosus MP-10 Genome Sequence.

Abriouel H, Pérez Montoro B, Casimiro-Soriguer CS, Pérez Pulido AJ, Knapp CW, Caballero Gómez N, Castillo-Gutiérrez S, Estudillo-Martínez MD, Gálvez A, Benomar N.

Front Microbiol. 2017 May 22;8:891. doi: 10.3389/fmicb.2017.00891. eCollection 2017.

2.

Sma3s: A universal tool for easy functional annotation of proteomes and transcriptomes.

Casimiro-Soriguer CS, Muñoz-Mérida A, Pérez-Pulido AJ.

Proteomics. 2017 Jun;17(12). doi: 10.1002/pmic.201700071.

PMID:
28544705
3.

Reading the Evolution of Compartmentalization in the Ribosome Assembly Toolbox: The YRG Protein Family.

Mier P, Pérez-Pulido AJ, Reynaud EG, Andrade-Navarro MA.

PLoS One. 2017 Jan 10;12(1):e0169750. doi: 10.1371/journal.pone.0169750. eCollection 2017.

4.

PlantFuncSSR: Integrating First and Next Generation Transcriptomics for Mining of SSR-Functional Domains Markers.

Sablok G, Pérez-Pulido AJ, Do T, Seong TY, Casimiro-Soriguer CS, La Porta N, Ralph PJ, Squartini A, Muñoz-Merida A, Harikrishna JA.

Front Plant Sci. 2016 Jun 27;7:878. doi: 10.3389/fpls.2016.00878. eCollection 2016.

5.

Genomic analysis of the nitrate-respiring Sphingopyxis granuli (formerly Sphingomonas macrogoltabida) strain TFA.

García-Romero I, Pérez-Pulido AJ, González-Flores YE, Reyes-Ramírez F, Santero E, Floriano B.

BMC Genomics. 2016 Feb 4;17:93. doi: 10.1186/s12864-016-2411-1.

6.

orthoFind Facilitates the Discovery of Homologous and Orthologous Proteins.

Mier P, Andrade-Navarro MA, Pérez-Pulido AJ.

PLoS One. 2015 Dec 1;10(12):e0143906. doi: 10.1371/journal.pone.0143906. eCollection 2015.

7.

AnABlast: a new in silico strategy for the genome-wide search of novel genes and fossil regions.

Jimenez J, Duncan CD, Gallardo M, Mata J, Perez-Pulido AJ.

DNA Res. 2015 Dec;22(6):439-49. doi: 10.1093/dnares/dsv025. Epub 2015 Oct 21.

8.

Proteome-wide search for PP2A substrates in fission yeast.

Bernal M, Zhurinsky J, Iglesias-Romero AB, Sanchez-Romero MA, Flor-Parra I, Tomas-Gallardo L, Perez-Pulido AJ, Jimenez J, Daga RR.

Proteomics. 2014 Jun;14(11):1367-80. doi: 10.1002/pmic.201300136. Epub 2014 Apr 29.

PMID:
24634168
9.

Sma3s: a three-step modular annotator for large sequence datasets.

Muñoz-Mérida A, Viguera E, Claros MG, Trelles O, Pérez-Pulido AJ.

DNA Res. 2014 Aug;21(4):341-53. doi: 10.1093/dnares/dsu001. Epub 2014 Feb 5.

10.

Classification of protein motifs based on subcellular localization uncovers evolutionary relationships at both sequence and functional levels.

Parras-Moltó M, Campos-Laborie FJ, García-Diéguez J, Rodríguez-Griñolo MR, Pérez-Pulido AJ.

BMC Bioinformatics. 2013 Jul 18;14:229. doi: 10.1186/1471-2105-14-229.

11.

Yeast as a biosensor of detoxification: a tool for identifying new compounds that revert multidrug resistance.

Martín-Cordero C, Sanchez-Pico A, Leon-Gonzalez AJ, Perez-Pulido AJ, Daga RR.

Curr Drug Targets. 2013 Aug;14(9):964-85. Review.

PMID:
23614676
12.

Semirna: searching for plant miRNAs using target sequences.

Muñoz-Mérida A, Perkins JR, Viguera E, Thode G, Bejarano ER, Pérez-Pulido AJ.

OMICS. 2012 Apr;16(4):168-77. doi: 10.1089/omi.2011.0115. Epub 2012 Mar 20.

PMID:
22433074
13.

Mpg2 interacts and cooperates with Mpg1 to maintain yeast glycosylation.

Muñoz-Centeno MC, Martín-Guevara C, Flores A, Pérez-Pulido AJ, Antúnez-Rodríguez C, Castillo AG, Sanchez-Durán M, Mier P, Bejarano ER.

FEMS Yeast Res. 2012 Aug;12(5):511-20. doi: 10.1111/j.1567-1364.2012.00801.x. Epub 2012 Apr 30.

14.

Identification of O-mannosylated virulence factors in Ustilago maydis.

Fernández-Álvarez A, Marín-Menguiano M, Lanver D, Jiménez-Martín A, Elías-Villalobos A, Pérez-Pulido AJ, Kahmann R, Ibeas JI.

PLoS Pathog. 2012;8(3):e1002563. doi: 10.1371/journal.ppat.1002563. Epub 2012 Mar 1.

15.

Fungal Smn and Spf30 homologues are mainly present in filamentous fungi and genomes with many introns: implications for spinal muscular atrophy.

Mier P, Pérez-Pulido AJ.

Gene. 2012 Jan 10;491(2):135-41. doi: 10.1016/j.gene.2011.10.006. Epub 2011 Oct 13.

PMID:
22020225
16.

A biclustering algorithm for extracting bit-patterns from binary datasets.

Rodriguez-Baena DS, Perez-Pulido AJ, Aguilar-Ruiz JS.

Bioinformatics. 2011 Oct 1;27(19):2738-45. doi: 10.1093/bioinformatics/btr464. Epub 2011 Aug 8.

PMID:
21824973
17.

The HIV type 1 protease L10I minor mutation decreases replication capacity and confers resistance to protease inhibitors.

Flor-Parra F, Pérez-Pulido AJ, Pachón J, Pérez-Romero P.

AIDS Res Hum Retroviruses. 2011 Jan;27(1):65-70. doi: 10.1089/aid.2010.0072. Epub 2010 Dec 13.

PMID:
21142921
18.

MOWServ: a web client for integration of bioinformatic resources.

Ramírez S, Muñoz-Mérida A, Karlsson J, García M, Pérez-Pulido AJ, Claros MG, Trelles O.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W671-6. doi: 10.1093/nar/gkq497. Epub 2010 Jun 4.

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