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Items: 1 to 20 of 83


ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins.

Krassowski M, Paczkowska M, Cullion K, Huang T, Dzneladze I, Ouellette BFF, Yamada JT, Fradet-Turcotte A, Reimand J.

Nucleic Acids Res. 2018 Jan 4;46(D1):D901-D910. doi: 10.1093/nar/gkx973.


Serial, parallel and hierarchical decision making in primates.

Zylberberg A, Lorteije JA, Ouellette BG, De Zeeuw CI, Sigman M, Roelfsema P.

Elife. 2017 Jun 26;6. pii: e17331. doi: 10.7554/eLife.17331.


A robot for high yield electrophysiology and morphology of single neurons in vivo.

Li L, Ouellette B, Stoy WA, Garren EJ, Daigle TL, Forest CR, Koch C, Zeng H.

Nat Commun. 2017 Jun 1;8:15604. doi: 10.1038/ncomms15604.


Diverse Central Projection Patterns of Retinal Ganglion Cells.

Martersteck EM, Hirokawa KE, Evarts M, Bernard A, Duan X, Li Y, Ng L, Oh SW, Ouellette B, Royall JJ, Stoecklin M, Wang Q, Zeng H, Sanes JR, Harris JA.

Cell Rep. 2017 Feb 21;18(8):2058-2072. doi: 10.1016/j.celrep.2017.01.075.


Inferring cortical function in the mouse visual system through large-scale systems neuroscience.

Hawrylycz M, Anastassiou C, Arkhipov A, Berg J, Buice M, Cain N, Gouwens NW, Gratiy S, Iyer R, Lee JH, Mihalas S, Mitelut C, Olsen S, Reid RC, Teeter C, de Vries S, Waters J, Zeng H, Koch C; MindScope.

Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):7337-44. doi: 10.1073/pnas.1512901113.


Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers.

Brazas MD, Ouellette BF.

PLoS Comput Biol. 2016 Jun 9;12(6):e1004916. doi: 10.1371/journal.pcbi.1004916. eCollection 2016 Jun.


Analysis of five years of controlled access and data sharing compliance at the International Cancer Genome Consortium.

ICGC Data Access Compliance Office; ICGC International Data Access Committee.

Nat Genet. 2016 Mar;48(3):224-5. doi: 10.1038/ng.3499. No abstract available.


The Formation of Hierarchical Decisions in the Visual Cortex.

Lorteije JAM, Zylberberg A, Ouellette BG, De Zeeuw CI, Sigman M, Roelfsema PR.

Neuron. 2015 Sep 23;87(6):1344-1356. doi: 10.1016/j.neuron.2015.08.015. Epub 2015 Sep 10.


Pathway and network analysis of cancer genomes.

Creixell P, Reimand J, Haider S, Wu G, Shibata T, Vazquez M, Mustonen V, Gonzalez-Perez A, Pearson J, Sander C, Raphael BJ, Marks DS, Ouellette BFF, Valencia A, Bader GD, Boutros PC, Stuart JM, Linding R, Lopez-Bigas N, Stein LD; Mutation Consequences and Pathway Analysis Working Group of the International Cancer Genome Consortium.

Nat Methods. 2015 Jul;12(7):615-621. doi: 10.1038/nmeth.3440.


GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training.

Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P, Lewitter F, Mulder N, Palagi PM, Schneider MV, van Gelder CW; GOBLET Consortium.

PLoS Comput Biol. 2015 Apr 9;11(4):e1004143. doi: 10.1371/journal.pcbi.1004143. eCollection 2015 Apr. Erratum in: PLoS Comput Biol. 2015 May;11(5):e1004281. Atwood, Teresa K [corrected to Attwood, Teresa K].


A quick guide for building a successful bioinformatics community.

Budd A, Corpas M, Brazas MD, Fuller JC, Goecks J, Mulder NJ, Michaut M, Ouellette BF, Pawlik A, Blomberg N.

PLoS Comput Biol. 2015 Feb 5;11(2):e1003972. doi: 10.1371/journal.pcbi.1003972. eCollection 2015 Feb.


Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation.

Harris JA, Hirokawa KE, Sorensen SA, Gu H, Mills M, Ng LL, Bohn P, Mortrud M, Ouellette B, Kidney J, Smith KA, Dang C, Sunkin S, Bernard A, Oh SW, Madisen L, Zeng H.

Front Neural Circuits. 2014 Jul 10;8:76. doi: 10.3389/fncir.2014.00076. eCollection 2014.


The International Cancer Genome Consortium's evolving data-protection policies.

Milius D, Dove ES, Chalmers D, Dyke SO, Kato K, Nicolás P, Ouellette BF, Ozenberger B, Rodriguez LL, Zeps N, Joly Y.

Nat Biotechnol. 2014 Jun;32(6):519-23. doi: 10.1038/nbt.2926. No abstract available.


A mesoscale connectome of the mouse brain.

Oh SW, Harris JA, Ng L, Winslow B, Cain N, Mihalas S, Wang Q, Lau C, Kuan L, Henry AM, Mortrud MT, Ouellette B, Nguyen TN, Sorensen SA, Slaughterbeck CR, Wakeman W, Li Y, Feng D, Ho A, Nicholas E, Hirokawa KE, Bohn P, Joines KM, Peng H, Hawrylycz MJ, Phillips JW, Hohmann JG, Wohnoutka P, Gerfen CR, Koch C, Bernard A, Dang C, Jones AR, Zeng H.

Nature. 2014 Apr 10;508(7495):207-14. doi: 10.1038/nature13186. Epub 2014 Apr 2.


Systematic comparison of adeno-associated virus and biotinylated dextran amine reveals equivalent sensitivity between tracers and novel projection targets in the mouse brain.

Wang Q, Henry AM, Harris JA, Oh SW, Joines KM, Nyhus J, Hirokawa KE, Dee N, Mortrud M, Parry S, Ouellette B, Caldejon S, Bernard A, Jones AR, Zeng H, Hohmann JG.

J Comp Neurol. 2014 Jun 15;522(9):1989-2012. doi: 10.1002/cne.23567.


Two phase 3 trials of bapineuzumab in mild-to-moderate Alzheimer's disease.

Salloway S, Sperling R, Fox NC, Blennow K, Klunk W, Raskind M, Sabbagh M, Honig LS, Porsteinsson AP, Ferris S, Reichert M, Ketter N, Nejadnik B, Guenzler V, Miloslavsky M, Wang D, Lu Y, Lull J, Tudor IC, Liu E, Grundman M, Yuen E, Black R, Brashear HR; Bapineuzumab 301 and 302 Clinical Trial Investigators.

N Engl J Med. 2014 Jan 23;370(4):322-33. doi: 10.1056/NEJMoa1304839.


Education in computational biology today and tomorrow.

Fox JA, Ouellette BF.

PLoS Comput Biol. 2013;9(12):e1003391. doi: 10.1371/journal.pcbi.1003391. Epub 2013 Dec 12. No abstract available.


Computational approaches to identify functional genetic variants in cancer genomes.

Gonzalez-Perez A, Mustonen V, Reva B, Ritchie GR, Creixell P, Karchin R, Vazquez M, Fink JL, Kassahn KS, Pearson JV, Bader GD, Boutros PC, Muthuswamy L, Ouellette BF, Reimand J, Linding R, Shibata T, Valencia A, Butler A, Dronov S, Flicek P, Shannon NB, Carter H, Ding L, Sander C, Stuart JM, Stein LD, Lopez-Bigas N; International Cancer Genome Consortium Mutation Pathways and Consequences Subgroup of the Bioinformatics Analyses Working Group.

Nat Methods. 2013 Aug;10(8):723-9. doi: 10.1038/nmeth.2562.


Compensating for literature annotation bias when predicting novel drug-disease relationships through Medical Subject Heading Over-representation Profile (MeSHOP) similarity.

Cheung WA, Ouellette BF, Wasserman WW.

BMC Med Genomics. 2013;6 Suppl 2:S3. doi: 10.1186/1755-8794-6-S2-S3. Epub 2013 May 7.


Navigating the changing learning landscape: perspective from

Brazas MD, Ouellette BF.

Brief Bioinform. 2013 Sep;14(5):556-62. doi: 10.1093/bib/bbt016. Epub 2013 Mar 20.

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