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Items: 1 to 20 of 264

1.

Quantifying the dominant growth mechanisms of dimorphic yeast using a lattice-based model.

Tronnolone H, Gardner JM, Sundstrom JF, Jiranek V, Oliver SG, Binder BJ.

J R Soc Interface. 2017 Sep;14(134). pii: 20170314. doi: 10.1098/rsif.2017.0314.

PMID:
28954849
2.

Bacterial Signaling Nucleotides Inhibit Yeast Cell Growth by Impacting Mitochondrial and Other Specifically Eukaryotic Functions.

Hesketh A, Vergnano M, Wan C, Oliver SG.

MBio. 2017 Jul 25;8(4). pii: e01047-17. doi: 10.1128/mBio.01047-17.

3.

Metabolic modeling to identify engineering targets for Komagataella phaffii: The effect of biomass composition on gene target identification.

Cankorur-Cetinkaya A, Dikicioglu D, Oliver SG.

Biotechnol Bioeng. 2017 Nov;114(11):2605-2615. doi: 10.1002/bit.26380. Epub 2017 Aug 15.

PMID:
28691262
4.

CamOptimus: a tool for exploiting complex adaptive evolution to optimize experiments and processes in biotechnology.

Cankorur-Cetinkaya A, Dias JML, Kludas J, Slater NKH, Rousu J, Oliver SG, Dikicioglu D.

Microbiology. 2017 Jun;163(6):829-839. doi: 10.1099/mic.0.000477. Epub 2017 Jun 21.

PMID:
28635591
5.

Cholinergic neuron gene expression differences captured by translational profiling in a mouse model of Alzheimer's disease.

McKeever PM, Kim T, Hesketh AR, MacNair L, Miletic D, Favrin G, Oliver SG, Zhang Z, St George-Hyslop P, Robertson J.

Neurobiol Aging. 2017 Sep;57:104-119. doi: 10.1016/j.neurobiolaging.2017.05.014. Epub 2017 May 25.

PMID:
28628896
6.

Spinal motor neuron protein supersaturation patterns are associated with inclusion body formation in ALS.

Ciryam P, Lambert-Smith IA, Bean DM, Freer R, Cid F, Tartaglia GG, Saunders DN, Wilson MR, Oliver SG, Morimoto RI, Dobson CM, Vendruscolo M, Favrin G, Yerbury JJ.

Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3935-E3943. doi: 10.1073/pnas.1613854114. Epub 2017 Apr 10.

7.

Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes.

Vlastaridis P, Kyriakidou P, Chaliotis A, Van de Peer Y, Oliver SG, Amoutzias GD.

Gigascience. 2017 Feb 1;6(2):1-11. doi: 10.1093/gigascience/giw015.

8.

The Pivotal Role of Protein Phosphorylation in the Control of Yeast Central Metabolism.

Vlastaridis P, Papakyriakou A, Chaliotis A, Stratikos E, Oliver SG, Amoutzias GD.

G3 (Bethesda). 2017 Apr 3;7(4):1239-1249. doi: 10.1534/g3.116.037218.

9.

Chronological Lifespan in Yeast Is Dependent on the Accumulation of Storage Carbohydrates Mediated by Yak1, Mck1 and Rim15 Kinases.

Cao L, Tang Y, Quan Z, Zhang Z, Oliver SG, Zhang N.

PLoS Genet. 2016 Dec 6;12(12):e1006458. doi: 10.1371/journal.pgen.1006458. eCollection 2016 Dec.

10.

The metabolome 18 years on: a concept comes of age.

Kell DB, Oliver SG.

Metabolomics. 2016;12(9):148. Epub 2016 Sep 2. Review.

11.

Model organism databases: essential resources that need the support of both funders and users.

Oliver SG, Lock A, Harris MA, Nurse P, Wood V.

BMC Biol. 2016 Jun 22;14:49. doi: 10.1186/s12915-016-0276-z.

12.

Response to 'The Need for Speed', by Matsson et al.

Mendes P, Oliver SG, Kell DB.

Trends Pharmacol Sci. 2016 Apr;37(4):245-6. doi: 10.1016/j.tips.2016.02.004. Epub 2016 Feb 26. No abstract available.

13.

Yeast-Based High-Throughput Screens to Identify Novel Compounds Active against Brugia malayi.

Bilsland E, Bean DM, Devaney E, Oliver SG.

PLoS Negl Trop Dis. 2016 Jan 26;10(1):e0004401. doi: 10.1371/journal.pntd.0004401. eCollection 2016 Jan.

14.

A Tool for Multiple Targeted Genome Deletions that Is Precise, Scar-Free, and Suitable for Automation.

Aubrey W, Riley MC, Young M, King RD, Oliver SG, Clare A.

PLoS One. 2015 Dec 2;10(12):e0142494. doi: 10.1371/journal.pone.0142494. eCollection 2015.

15.

Fitting Transporter Activities to Cellular Drug Concentrations and Fluxes: Why the Bumblebee Can Fly.

Mendes P, Oliver SG, Kell DB.

Trends Pharmacol Sci. 2015 Nov;36(11):710-23. doi: 10.1016/j.tips.2015.07.006. Epub 2015 Nov 1. Review.

16.

Biomass composition: the "elephant in the room" of metabolic modelling.

Dikicioglu D, Kırdar B, Oliver SG.

Metabolomics. 2015;11(6):1690-1701. Epub 2015 Jun 11.

17.

Systems Biology of Alzheimer's Disease. Preface.

Castrillo JI, Oliver SG.

Methods Mol Biol. 2016;1303:v-vi. No abstract available.

PMID:
26443872
18.

CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data.

Fidaner IB, Cankorur-Cetinkaya A, Dikicioglu D, Kirdar B, Cemgil AT, Oliver SG.

Bioinformatics. 2016 Feb 1;32(3):388-97. doi: 10.1093/bioinformatics/btv532. Epub 2015 Sep 26.

19.

Alzheimer's as a Systems-Level Disease Involving the Interplay of Multiple Cellular Networks.

Castrillo JI, Oliver SG.

Methods Mol Biol. 2016;1303:3-48. doi: 10.1007/978-1-4939-2627-5_1. Review.

PMID:
26235058
20.

The Yeast GSK-3 Homologue Mck1 Is a Key Controller of Quiescence Entry and Chronological Lifespan.

Quan Z, Cao L, Tang Y, Yan Y, Oliver SG, Zhang N.

PLoS Genet. 2015 Jun 23;11(6):e1005282. doi: 10.1371/journal.pgen.1005282. eCollection 2015 Jun.

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