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Items: 1 to 20 of 33

1.

VerSeDa: vertebrate secretome database.

Cortazar AR, Oguiza JA, Aransay AM, Lavín JL.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/baw171.

PMID:
28365718
2.

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.

Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, Cerdá-Olmedo E, Cheng JF, Domínguez A, Eliáš M, Eslava AP, Glaser F, Gutiérrez G, Heitman J, Henrissat B, Iturriaga EA, Lang BF, Lavín JL, Lee SC, Li W, Lindquist E, López-García S, Luque EM, Marcos AT, Martin J, McCluskey K, Medina HR, Miralles-Durán A, Miyazaki A, Muñoz-Torres E, Oguiza JA, Ohm RA, Olmedo M, Orejas M, Ortiz-Castellanos L, Pisabarro AG, Rodríguez-Romero J, Ruiz-Herrera J, Ruiz-Vázquez R, Sanz C, Schackwitz W, Shahriari M, Shelest E, Silva-Franco F, Soanes D, Syed K, Tagua VG, Talbot NJ, Thon MR, Tice H, de Vries RP, Wiebenga A, Yadav JS, Braun EL, Baker SE, Garre V, Schmutz J, Horwitz BA, Torres-Martínez S, Idnurm A, Herrera-Estrella A, Gabaldón T, Grigoriev IV.

Curr Biol. 2016 Jun 20;26(12):1577-84. doi: 10.1016/j.cub.2016.04.038. Epub 2016 May 26.

PMID:
27238284
3.

Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus.

Alfaro M, Castanera R, Lavín JL, Grigoriev IV, Oguiza JA, Ramírez L, Pisabarro AG.

Environ Microbiol. 2016 Dec;18(12):4710-4726. doi: 10.1111/1462-2920.13360. Epub 2016 Jun 8.

PMID:
27117896
4.

PECAS: prokaryotic and eukaryotic classical analysis of secretome.

Cortazar AR, Oguiza JA, Aransay AM, Lavín JL.

Amino Acids. 2015 Dec;47(12):2659-63. doi: 10.1007/s00726-015-2058-2. Epub 2015 Aug 2.

PMID:
26233761
5.

Genomewide analysis of phytochrome proteins in the phylum Basidiomycota.

Lavín JL, Ramírez L, Pisabarro AG, Oguiza JA.

J Basic Microbiol. 2015 Sep;55(9):1141-7. doi: 10.1002/jobm.201500078. Epub 2015 Apr 7.

PMID:
25847700
6.

Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi.

Castanera R, Pérez G, López L, Sancho R, Santoyo F, Alfaro M, Gabaldón T, Pisabarro AG, Oguiza JA, Ramírez L.

BMC Genomics. 2014 Dec 5;15:1071. doi: 10.1186/1471-2164-15-1071.

7.

Comparative analysis of secretomes in basidiomycete fungi.

Alfaro M, Oguiza JA, Ramírez L, Pisabarro AG.

J Proteomics. 2014 May 6;102:28-43. doi: 10.1016/j.jprot.2014.03.001. Epub 2014 Mar 12. Review.

PMID:
24631824
8.

Dual-histidine kinases in basidiomycete fungi.

Lavín JL, Sarasola-Puente V, Ramírez L, Pisabarro AG, Oguiza JA.

C R Biol. 2014 Feb;337(2):111-6. doi: 10.1016/j.crvi.2013.12.007. Epub 2014 Feb 10.

PMID:
24581805
9.

SECRETOOL: integrated secretome analysis tool for fungi.

Cortázar AR, Aransay AM, Alfaro M, Oguiza JA, Lavín JL.

Amino Acids. 2014 Feb;46(2):471-3. doi: 10.1007/s00726-013-1649-z. Epub 2013 Dec 27.

PMID:
24370983
10.

FUNGALOXPHOS: an integrated database for oxidative phosphorylation in fungi.

Lavín JL, Marcet-Houben M, Gutiérrez-Vázquez RL, Ramírez L, Pisabarro AG, Gabaldón T, Oguiza JA.

Mitochondrion. 2013 Jul;13(4):357-9. doi: 10.1016/j.mito.2013.04.009. Epub 2013 Apr 28.

PMID:
23628689
11.

Two-component signal transduction in Agaricus bisporus: a comparative genomic analysis with other basidiomycetes through the web-based tool BASID2CS.

Lavín JL, García-Yoldi A, Ramírez L, Pisabarro AG, Oguiza JA.

Fungal Genet Biol. 2013 Jun;55:77-84. doi: 10.1016/j.fgb.2012.09.012. Epub 2012 Oct 31.

PMID:
23123423
12.

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.

Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, Ryu JS, Kubicek CP, Schmoll M, Gaskell J, Hammel KE, St John FJ, Vanden Wymelenberg A, Sabat G, Splinter BonDurant S, Syed K, Yadav JS, Doddapaneni H, Subramanian V, Lavín JL, Oguiza JA, Perez G, Pisabarro AG, Ramirez L, Santoyo F, Master E, Coutinho PM, Henrissat B, Lombard V, Magnuson JK, Kües U, Hori C, Igarashi K, Samejima M, Held BW, Barry KW, LaButti KM, Lapidus A, Lindquist EA, Lucas SM, Riley R, Salamov AA, Hoffmeister D, Schwenk D, Hadar Y, Yarden O, de Vries RP, Wiebenga A, Stenlid J, Eastwood D, Grigoriev IV, Berka RM, Blanchette RA, Kersten P, Martinez AT, Vicuna R, Cullen D.

Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5458-63. doi: 10.1073/pnas.1119912109. Epub 2012 Mar 20. Erratum in: Proc Natl Acad Sci U S A. 2012 May 22;109(21):8352. San, Ryu Jae [corrected to Ryu, Jae San].

13.

Genomics and transcriptomics characterization of genes expressed during postharvest at 4°C by the edible basidiomycete Pleurotus ostreatus.

Ramírez L, Oguiza JA, Pérez G, Lavín JL, Omarini A, Santoyo F, Alfaro M, Castanera R, Parenti A, Muguerza E, Pisabarro AG.

Int Microbiol. 2011 Jun;14(2):111-20.

14.

The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi.

Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A, Asiegbu FO, Baker SE, Barry K, Bendiksby M, Blumentritt M, Coutinho PM, Cullen D, de Vries RP, Gathman A, Goodell B, Henrissat B, Ihrmark K, Kauserud H, Kohler A, LaButti K, Lapidus A, Lavin JL, Lee YH, Lindquist E, Lilly W, Lucas S, Morin E, Murat C, Oguiza JA, Park J, Pisabarro AG, Riley R, Rosling A, Salamov A, Schmidt O, Schmutz J, Skrede I, Stenlid J, Wiebenga A, Xie X, Kües U, Hibbett DS, Hoffmeister D, Högberg N, Martin F, Grigoriev IV, Watkinson SC.

Science. 2011 Aug 5;333(6043):762-5. doi: 10.1126/science.1205411. Epub 2011 Jul 14. Erratum in: Science. 2011 Sep 30;333(6051):1825.

15.

Differences in two-component signal transduction proteins among the genus Brucella: implications for host preference and pathogenesis.

Lavín JL, Binnewies TT, Pisabarro AG, Ussery DW, García-Lobo JM, Oguiza JA.

Vet Microbiol. 2010 Aug 26;144(3-4):478-83. doi: 10.1016/j.vetmic.2010.01.007. Epub 2010 Jan 28.

PMID:
20153589
16.

Genomic analysis of two-component signal transduction proteins in basidiomycetes.

Lavín JL, Ramírez L, Ussery DW, Pisabarro AG, Oguiza JA.

J Mol Microbiol Biotechnol. 2010;18(2):63-73. doi: 10.1159/000277654. Epub 2010 Jan 23.

PMID:
20110730
17.

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavín JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1954-9. doi: 10.1073/pnas.0809575106. Epub 2009 Feb 4.

18.

Comparative genomics of the oxidative phosphorylation system in fungi.

Lavín JL, Oguiza JA, Ramírez L, Pisabarro AG.

Fungal Genet Biol. 2008 Sep;45(9):1248-56. doi: 10.1016/j.fgb.2008.06.005. Epub 2008 Jul 3.

PMID:
18647654
19.

Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae.

Lavín JL, Kiil K, Resano O, Ussery DW, Oguiza JA.

BMC Genomics. 2007 Oct 31;8:397.

20.

Molecular and insecticidal characterization of a Cry1I protein toxic to insects of the families Noctuidae, Tortricidae, Plutellidae, and Chrysomelidae.

Ruiz de Escudero I, Estela A, Porcar M, Martínez C, Oguiza JA, Escriche B, Ferré J, Caballero P.

Appl Environ Microbiol. 2006 Jul;72(7):4796-804.

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