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Items: 1 to 20 of 156

1.

Biological species in the viral world.

Bobay LM, Ochman H.

Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):6040-6045. doi: 10.1073/pnas.1717593115. Epub 2018 May 21.

PMID:
29784828
2.

ConSpeciFix: Classifying prokaryotic species based on gene flow.

Bobay LM, Ellis BS, Ochman H.

Bioinformatics. 2018 May 16. doi: 10.1093/bioinformatics/bty400. [Epub ahead of print]

PMID:
29771275
3.

A Genome-Wide Assay Specifies Only GreA as a Transcription Fidelity Factor in Escherichia coli.

Traverse CC, Ochman H.

G3 (Bethesda). 2018 May 16. pii: g3.200209.2018. doi: 10.1534/g3.118.200209. [Epub ahead of print]

4.

Publisher Correction: Enterotypes in the landscape of gut microbial community composition.

Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P.

Nat Microbiol. 2018 Mar;3(3):388. doi: 10.1038/s41564-018-0114-x.

PMID:
29440750
5.

Local genic base composition impacts protein production and cellular fitness.

Quandt EM, Traverse CC, Ochman H.

PeerJ. 2018 Jan 16;6:e4286. doi: 10.7717/peerj.4286. eCollection 2018.

6.

Rates of gut microbiome divergence in mammals.

Nishida AH, Ochman H.

Mol Ecol. 2018 Apr;27(8):1884-1897. doi: 10.1111/mec.14473. Epub 2018 Jan 31.

PMID:
29290090
7.

Enterotypes in the landscape of gut microbial community composition.

Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P.

Nat Microbiol. 2018 Jan;3(1):8-16. doi: 10.1038/s41564-017-0072-8. Epub 2017 Dec 18. Review. Erratum in: Nat Microbiol. 2018 Feb 13;:.

PMID:
29255284
8.

Impact of Recombination on the Base Composition of Bacteria and Archaea.

Bobay LM, Ochman H.

Mol Biol Evol. 2017 Oct 1;34(10):2627-2636. doi: 10.1093/molbev/msx189.

PMID:
28957503
9.

Genome-Wide Spectra of Transcription Insertions and Deletions Reveal That Slippage Depends on RNA:DNA Hybrid Complementarity.

Traverse CC, Ochman H.

MBio. 2017 Aug 29;8(4). pii: e01230-17. doi: 10.1128/mBio.01230-17.

10.

The Evolution of Bacterial Genome Architecture.

Bobay LM, Ochman H.

Front Genet. 2017 May 30;8:72. doi: 10.3389/fgene.2017.00072. eCollection 2017. Review.

11.

Unexplored Archaeal Diversity in the Great Ape Gut Microbiome.

Raymann K, Moeller AH, Goodman AL, Ochman H.

mSphere. 2017 Feb 22;2(1). pii: e00026-17. doi: 10.1128/mSphere.00026-17. eCollection 2017 Jan-Feb.

12.

Biological species are universal across Life's domains.

Bobay LM, Ochman H.

Genome Biol Evol. 2017 Feb 10. doi: 10.1093/gbe/evx026. [Epub ahead of print] No abstract available.

13.

Cospeciation of gut microbiota with hominids.

Moeller AH, Caro-Quintero A, Mjungu D, Georgiev AV, Lonsdorf EV, Muller MN, Pusey AE, Peeters M, Hahn BH, Ochman H.

Science. 2016 Jul 22;353(6297):380-2. doi: 10.1126/science.aaf3951.

14.

Human symbionts inject and neutralize antibacterial toxins to persist in the gut.

Wexler AG, Bao Y, Whitney JC, Bobay LM, Xavier JB, Schofield WB, Barry NA, Russell AB, Tran BQ, Goo YA, Goodlett DR, Ochman H, Mougous JD, Goodman AL.

Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3639-44. doi: 10.1073/pnas.1525637113. Epub 2016 Mar 8.

15.

Realizing Microbial Evolution.

Ochman H.

Cold Spring Harb Perspect Biol. 2016 May 2;8(5). pii: a018101. doi: 10.1101/cshperspect.a018101. Review.

16.

Conserved rates and patterns of transcription errors across bacterial growth states and lifestyles.

Traverse CC, Ochman H.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):3311-6. doi: 10.1073/pnas.1525329113. Epub 2016 Feb 16. Erratum in: Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):E4257-8.

17.

Social behavior shapes the chimpanzee pan-microbiome.

Moeller AH, Foerster S, Wilson ML, Pusey AE, Hahn BH, Ochman H.

Sci Adv. 2016 Jan 15;2(1):e1500997. doi: 10.1126/sciadv.1500997. eCollection 2016 Jan.

18.

Assessing the Unseen Bacterial Diversity in Microbial Communities.

Caro-Quintero A, Ochman H.

Genome Biol Evol. 2015 Nov 27;7(12):3416-25. doi: 10.1093/gbe/evv234.

19.

Impermanence of bacterial clones.

Bobay LM, Traverse CC, Ochman H.

Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):8893-900. doi: 10.1073/pnas.1501724112.

20.

Effects of Genic Base Composition on Growth Rate in G+C-rich Genomes.

Kelkar YD, Phillips DS, Ochman H.

G3 (Bethesda). 2015 Apr 20;5(6):1247-52. doi: 10.1534/g3.115.016824. Erratum in: G3 (Bethesda). 2015 Dec;5(12):2921.

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