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Items: 18


WormBase 2016: expanding to enable helminth genomic research.

Howe KL, Bolt BJ, Cain S, Chan J, Chen WJ, Davis P, Done J, Down T, Gao S, Grove C, Harris TW, Kishore R, Lee R, Lomax J, Li Y, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Schindelman G, Stanley E, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Wright A, Yook K, Berriman M, Kersey P, Schedl T, Stein L, Sternberg PW.

Nucleic Acids Res. 2016 Jan 4;44(D1):D774-80. doi: 10.1093/nar/gkv1217.


Identification of the IGF1/PI3K/NF κB/ERK gene signalling networks associated with chemotherapy resistance and treatment response in high-grade serous epithelial ovarian cancer.

Koti M, Gooding RJ, Nuin P, Haslehurst A, Crane C, Weberpals J, Childs T, Bryson P, Dharsee M, Evans K, Feilotter HE, Park PC, Squire JA.

BMC Cancer. 2013 Nov 16;13:549. doi: 10.1186/1471-2407-13-549.


Exploring high dimensional data with Butterfly: a novel classification algorithm based on discrete dynamical systems.

Geraci J, Dharsee M, Nuin P, Haslehurst A, Koti M, Feilotter HE, Evans K.

Bioinformatics. 2014 Mar 1;30(5):712-8. doi: 10.1093/bioinformatics/btt602.


MicroRNA signature helps distinguish early from late biochemical failure in prostate cancer.

Lichner Z, Fendler A, Saleh C, Nasser AN, Boles D, Al-Haddad S, Kupchak P, Dharsee M, Nuin PS, Evans KR, Jung K, Stephan C, Fleshner NE, Yousef GM.

Clin Chem. 2013 Nov;59(11):1595-603. doi: 10.1373/clinchem.2013.205450.


Transcriptomic and metabolomic analysis of Yukon Thellungiella plants grown in cabinets and their natural habitat show phenotypic plasticity.

Guevara DR, Champigny MJ, Tattersall A, Dedrick J, Wong CE, Li Y, Labbe A, Ping CL, Wang Y, Nuin P, Golding GB, McCarry BE, Summers PS, Moffatt BA, Weretilnyk EA.

BMC Plant Biol. 2012 Oct 1;12:175. doi: 10.1186/1471-2229-12-175.


Cross-tolerance between osmotic and freeze-thaw stress in microbial assemblages from temperate lakes.

Wilson SL, Frazer C, Cumming BF, Nuin PA, Walker VK.

FEMS Microbiol Ecol. 2012 Nov;82(2):405-15. doi: 10.1111/j.1574-6941.2012.01404.x.


EMT transcription factors snail and slug directly contribute to cisplatin resistance in ovarian cancer.

Haslehurst AM, Koti M, Dharsee M, Nuin P, Evans K, Geraci J, Childs T, Chen J, Li J, Weberpals J, Davey S, Squire J, Park PC, Feilotter H.

BMC Cancer. 2012 Mar 19;12:91. doi: 10.1186/1471-2407-12-91.


PTEN genomic deletions that characterize aggressive prostate cancer originate close to segmental duplications.

Yoshimoto M, Ludkovski O, DeGrace D, Williams JL, Evans A, Sircar K, Bismar TA, Nuin P, Squire JA.

Genes Chromosomes Cancer. 2012 Feb;51(2):149-60. doi: 10.1002/gcc.20939.


Design and verification of a pangenome microarray oligonucleotide probe set for Dehalococcoides spp.

Hug LA, Salehi M, Nuin P, Tillier ER, Edwards EA.

Appl Environ Microbiol. 2011 Aug;77(15):5361-9. doi: 10.1128/AEM.00063-11.


Analysis of segmental duplications, mouse genome synteny and recurrent cancer-associated amplicons in human chromosome 6p21-p12.

Martin JW, Yoshimoto M, Ludkovski O, Thorner PS, Zielenska M, Squire JA, Nuin PA.

Cytogenet Genome Res. 2010 Jun;128(4):199-213. doi: 10.1159/000308353.


No correlation between the molecular subtype of COL1A1-PDGFB fusion gene and the clinico-histopathological features of dermatofibrosarcoma protuberans.

Giacchero D, Maire G, Nuin PA, Berthier F, Ebran N, Carlotti A, Celerier P, Coindre JM, Esteve E, Fraitag S, Guillot B, Ranchere-Vince D, Saiag P, Terrier P, Lacour JP, Pedeutour F.

J Invest Dermatol. 2010 Mar;130(3):904-7. doi: 10.1038/jid.2009.338. No abstract available.


Variability of origin for the neocentromeric sequences in analphoid supernumerary marker chromosomes of well-differentiated liposarcomas.

Italiano A, Maire G, Sirvent N, Nuin PA, Keslair F, Foa C, Louis C, Aurias A, Pedeutour F.

Cancer Lett. 2009 Jan 18;273(2):323-30. doi: 10.1016/j.canlet.2008.08.025.


The accuracy of several multiple sequence alignment programs for proteins.

Nuin PA, Wang Z, Tillier ER.

BMC Bioinformatics. 2006 Oct 24;7:471.


Metaphase and array comparative genomic hybridization: unique copy number changes and gene amplification of medulloblastomas in South America.

Yoshimoto M, Bayani J, Nuin PA, Silva NS, Cavalheiro S, Stavale JN, Andrade JA, Zielenska M, Squire JA, de Toledo SR.

Cancer Genet Cytogenet. 2006 Oct 1;170(1):40-7.


Interphase FISH analysis of PTEN in histologic sections shows genomic deletions in 68% of primary prostate cancer and 23% of high-grade prostatic intra-epithelial neoplasias.

Yoshimoto M, Cutz JC, Nuin PA, Joshua AM, Bayani J, Evans AJ, Zielenska M, Squire JA.

Cancer Genet Cytogenet. 2006 Sep;169(2):128-37.


Transcriptional profiling implicates novel interactions between abiotic stress and hormonal responses in Thellungiella, a close relative of Arabidopsis.

Wong CE, Li Y, Labbe A, Guevara D, Nuin P, Whitty B, Diaz C, Golding GB, Gray GR, Weretilnyk EA, Griffith M, Moffatt BA.

Plant Physiol. 2006 Apr;140(4):1437-50.


SIMPROT: using an empirically determined indel distribution in simulations of protein evolution.

Pang A, Smith AD, Nuin PA, Tillier ER.

BMC Bioinformatics. 2005 Sep 27;6:236.

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