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Items: 1 to 20 of 102

1.

Eco-Metabolomics and Metabolic Modeling: Making the Leap From Model Systems in the Lab to Native Populations in the Field.

Nagler M, Nägele T, Gilli C, Fragner L, Korte A, Platzer A, Farlow A, Nordborg M, Weckwerth W.

Front Plant Sci. 2018 Nov 6;9:1556. doi: 10.3389/fpls.2018.01556. eCollection 2018.

2.

Publisher Correction: Ancient hybridization and strong adaptation to viruses across African vervet monkey populations.

Svardal H, Jasinska AJ, Apetrei C, Coppola G, Huang Y, Schmitt CA, Jacquelin B, Ramensky V, Müller-Trutwin M, Antonio M, Weinstock G, Grobler JP, Dewar K, Wilson RK, Turner TR, Warren WC, Freimer NB, Nordborg M.

Nat Genet. 2018 Nov;50(11):1617. doi: 10.1038/s41588-018-0124-x.

PMID:
30327573
3.

The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history.

Filiault DL, Ballerini ES, Mandáková T, Aköz G, Derieg NJ, Schmutz J, Jenkins J, Grimwood J, Shu S, Hayes RD, Hellsten U, Barry K, Yan J, Mihaltcheva S, Karafiátová M, Nizhynska V, Kramer EM, Lysak MA, Hodges SA, Nordborg M.

Elife. 2018 Oct 16;7. pii: e36426. doi: 10.7554/eLife.36426.

4.

GWAS with Heterogeneous Data: Estimating the Fraction of Phenotypic Variation Mediated by Gene Expression Data.

Sasaki E, Frommlet F, Nordborg M.

G3 (Bethesda). 2018 Aug 30;8(9):3059-3068. doi: 10.1534/g3.118.200571.

PMID:
30068524
Free PMC Article
5.

The maternal environment interacts with genetic variation in regulating seed dormancy in Swedish Arabidopsis thaliana.

Kerdaffrec E, Nordborg M.

PLoS One. 2017 Dec 27;12(12):e0190242. doi: 10.1371/journal.pone.0190242. eCollection 2017.

6.

Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples.

Pisupati R, Reichardt I, Seren Ü, Korte P, Nizhynska V, Kerdaffrec E, Uzunova K, Rabanal FA, Filiault DL, Nordborg M.

Sci Data. 2017 Dec 19;4:170184. doi: 10.1038/sdata.2017.184.

7.

Ancient hybridization and strong adaptation to viruses across African vervet monkey populations.

Svardal H, Jasinska AJ, Apetrei C, Coppola G, Huang Y, Schmitt CA, Jacquelin B, Ramensky V, Müller-Trutwin M, Antonio M, Weinstock G, Grobler JP, Dewar K, Wilson RK, Turner TR, Warren WC, Freimer NB, Nordborg M.

Nat Genet. 2017 Dec;49(12):1705-1713. doi: 10.1038/ng.3980. Epub 2017 Oct 30. Erratum in: Nat Genet. 2018 Nov;50(11):1617.

8.

The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog.

Togninalli M, Seren Ü, Meng D, Fitz J, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1150-D1156. doi: 10.1093/nar/gkx954.

9.

Epistatic and allelic interactions control expression of ribosomal RNA gene clusters in Arabidopsis thaliana.

Rabanal FA, Mandáková T, Soto-Jiménez LM, Greenhalgh R, Parrott DL, Lutzmayer S, Steffen JG, Nizhynska V, Mott R, Lysak MA, Clark RM, Nordborg M.

Genome Biol. 2017 May 3;18(1):75. doi: 10.1186/s13059-017-1209-z.

10.

Patterns of Polymorphism at the Self-Incompatibility Locus in 1,083 Arabidopsis thaliana Genomes.

Tsuchimatsu T, Goubet PM, Gallina S, Holl AC, Fobis-Loisy I, Bergès H, Marande W, Prat E, Meng D, Long Q, Platzer A, Nordborg M, Vekemans X, Castric V.

Mol Biol Evol. 2017 Aug 1;34(8):1878-1889. doi: 10.1093/molbev/msx122.

11.

Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana.

Rabanal FA, Nizhynska V, Mandáková T, Novikova PY, Lysak MA, Mott R, Nordborg M.

G3 (Bethesda). 2017 Apr 3;7(4):1201-1209. doi: 10.1534/g3.117.040204.

12.

On the post-glacial spread of human commensal Arabidopsis thaliana.

Lee CR, Svardal H, Farlow A, Exposito-Alonso M, Ding W, Novikova P, Alonso-Blanco C, Weigel D, Nordborg M.

Nat Commun. 2017 Feb 9;8:14458. doi: 10.1038/ncomms14458.

13.

Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits.

Imprialou M, Kahles A, Steffen JG, Osborne EJ, Gan X, Lempe J, Bhomra A, Belfield E, Visscher A, Greenhalgh R, Harberd NP, Goram R, Hein J, Robert-Seilaniantz A, Jones J, Stegle O, Kover P, Tsiantis M, Nordborg M, Rätsch G, Clark RM, Mott R.

Genetics. 2017 Apr;205(4):1425-1441. doi: 10.1534/genetics.116.192823. Epub 2017 Feb 7.

14.

Genome Sequencing Reveals the Origin of the Allotetraploid Arabidopsis suecica.

Novikova PY, Tsuchimatsu T, Simon S, Nizhynska V, Voronin V, Burns R, Fedorenko OM, Holm S, Säll T, Prat E, Marande W, Castric V, Nordborg M.

Mol Biol Evol. 2017 Apr 1;34(4):957-968. doi: 10.1093/molbev/msw299.

15.

Multiple alleles at a single locus control seed dormancy in Swedish Arabidopsis.

Kerdaffrec E, Filiault DL, Korte A, Sasaki E, Nizhynska V, Seren Ü, Nordborg M.

Elife. 2016 Dec 14;5. pii: e22502. doi: 10.7554/eLife.22502.

16.

AraPheno: a public database for Arabidopsis thaliana phenotypes.

Seren Ü, Grimm D, Fitz J, Weigel D, Nordborg M, Borgwardt K, Korte A.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1054-D1059. doi: 10.1093/nar/gkw986. Epub 2016 Oct 24.

17.

Germline replications and somatic mutation accumulation are independent of vegetative life span in Arabidopsis.

Watson JM, Platzer A, Kazda A, Akimcheva S, Valuchova S, Nizhynska V, Nordborg M, Riha K.

Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12226-12231. Epub 2016 Oct 11.

18.

The genetic architecture of freezing tolerance varies across the range of Arabidopsis thaliana.

Horton MW, Willems G, Sasaki E, Koornneef M, Nordborg M.

Plant Cell Environ. 2016 Nov;39(11):2570-2579. doi: 10.1111/pce.12812. Epub 2016 Sep 21.

PMID:
27487257
19.

Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana.

Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Ali H, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, Martienssen R, Koornneef M, Nordborg M, Juenger TE, de Jong H, Schranz ME.

Plant J. 2016 Oct;88(2):159-178. doi: 10.1111/tpj.13262. Epub 2016 Sep 13.

20.

Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism.

Novikova PY, Hohmann N, Nizhynska V, Tsuchimatsu T, Ali J, Muir G, Guggisberg A, Paape T, Schmid K, Fedorenko OM, Holm S, Säll T, Schlötterer C, Marhold K, Widmer A, Sese J, Shimizu KK, Weigel D, Krämer U, Koch MA, Nordborg M.

Nat Genet. 2016 Sep;48(9):1077-82. doi: 10.1038/ng.3617. Epub 2016 Jul 18.

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