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Items: 16

1.

Dissecting genealogy and cell cycle as sources of cell-to-cell variability in MAPK signaling using high-throughput lineage tracking.

Ricicova M, Hamidi M, Quiring A, Niemistö A, Emberly E, Hansen CL.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11403-8. doi: 10.1073/pnas.1215850110.

2.

Systems analysis identifies an essential role for SHANK-associated RH domain-interacting protein (SHARPIN) in macrophage Toll-like receptor 2 (TLR2) responses.

Zak DE, Schmitz F, Gold ES, Diercks AH, Peschon JJ, Valvo JS, Niemistö A, Podolsky I, Fallen SG, Suen R, Stolyar T, Johnson CD, Kennedy KA, Hamilton MK, Siggs OM, Beutler B, Aderem A.

Proc Natl Acad Sci U S A. 2011 Jul 12;108(28):11536-41. doi: 10.1073/pnas.1107577108.

3.

High-throughput tracking of single yeast cells in a microfluidic imaging matrix.

Falconnet D, Niemistö A, Taylor RJ, Ricicova M, Galitski T, Shmulevich I, Hansen CL.

Lab Chip. 2011 Feb 7;11(3):466-73. doi: 10.1039/c0lc00228c.

4.

Genome-wide analysis of effectors of peroxisome biogenesis.

Saleem RA, Long-O'Donnell R, Dilworth DJ, Armstrong AM, Jamakhandi AP, Wan Y, Knijnenburg TA, Niemistö A, Boyle J, Rachubinski RA, Shmulevich I, Aitchison JD.

PLoS One. 2010 Aug 4;5(8):e11953. doi: 10.1371/journal.pone.0011953.

5.

Image-based feedback control for real-time sorting of microspheres in a microfluidic device.

Munson MS, Spotts JM, Niemistö A, Selinummi J, Kralj JG, Salit ML, Ozinsky A.

Lab Chip. 2010 Sep 21;10(18):2402-10. doi: 10.1039/c004708b.

6.

Dynamic analysis of MAPK signaling using a high-throughput microfluidic single-cell imaging platform.

Taylor RJ, Falconnet D, Niemistö A, Ramsey SA, Prinz S, Shmulevich I, Galitski T, Hansen CL.

Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3758-63. doi: 10.1073/pnas.0813416106.

7.

Computational methods for estimation of cell cycle phase distributions of yeast cells.

Niemistö A, Nykter M, Aho T, Jalovaara H, Marjanen K, Ahdesmäki M, Ruusuvuori P, Tiainen M, Linne ML, Yli-Harja O.

EURASIP J Bioinform Syst Biol. 2007:46150. doi: 10.1155/2007/46150.

8.

A K-means segmentation method for finding 2-D object areas based on 3-D image stacks obtained by confocal microscopy.

Niemistö A, Korpelainen T, Saleem R, Yli-Harja O, Aitchison J, Shmulevich I.

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:5559-62.

PMID:
18003272
9.

Extraction of the number of peroxisomes in yeast cells by automated image analysis.

Niemistö A, Selinummi J, Saleem R, Shmulevich I, Aitchison J, Yli-Harja O.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:2353-6.

PMID:
17945710
10.

Simulating fluorescent microscope images of cell populations.

Lehmussola A, Selinummi J, Ruusuvuori P, Niemisto A, Yli-Harja O.

Conf Proc IEEE Eng Med Biol Soc. 2005;3:3153-6.

PMID:
17282913
11.

Automated quantification of lymph node size and number in surgical specimens of stage II colorectal cancer.

Niemisto A, Shmulevich I, Yli-Harja O, Chirieac LR, Hamilton SR.

Conf Proc IEEE Eng Med Biol Soc. 2005;6:6313-6.

PMID:
17281711
12.

Quantification of in vitro cell invasion through image analysis.

Niemisto A, Hu L, Yli-Harja O, Zhang W, Shmulevich I.

Conf Proc IEEE Eng Med Biol Soc. 2004;3:1703-6.

PMID:
17272032
13.

Analysis of angiogenesis using in vitro experiments and stochastic growth models.

Niemistö A, Dunmire V, Yli-Harja O, Zhang W, Shmulevich I.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Dec;72(6 Pt 1):062902.

PMID:
16485992
14.

Quantification of vesicles in differentiating human SH-SY5Y neuroblastoma cells by automated image analysis.

Selinummi J, Sarkanen JR, Niemistö A, Linne ML, Ylikomi T, Yli-Harja O, Jalonen TO.

Neurosci Lett. 2006 Mar 27;396(2):102-7.

PMID:
16356645
15.

Robust quantification of in vitro angiogenesis through image analysis.

Niemistö A, Dunmire V, Yli-Harja O, Zhang W, Shmulevich I.

IEEE Trans Med Imaging. 2005 Apr;24(4):549-53.

PMID:
15822812
16.

Insulin-like growth factor binding protein 2 promotes ovarian cancer cell invasion.

Lee EJ, Mircean C, Shmulevich I, Wang H, Liu J, Niemistö A, Kavanagh JJ, Lee JH, Zhang W.

Mol Cancer. 2005 Feb 2;4(1):7.

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