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Items: 1 to 20 of 27

1.

Targeting epithelial-mesenchymal plasticity in cancer: clinical and preclinical advances in therapy and monitoring.

Bhatia S, Monkman J, Toh AKL, Nagaraj SH, Thompson EW.

Biochem J. 2017 Sep 20;474(19):3269-3306. doi: 10.1042/BCJ20160782. Review.

PMID:
28931648
2.

Whole-genome landscape of pancreatic neuroendocrine tumours.

Scarpa A, Chang DK, Nones K, Corbo V, Patch AM, Bailey P, Lawlor RT, Johns AL, Miller DK, Mafficini A, Rusev B, Scardoni M, Antonello D, Barbi S, Sikora KO, Cingarlini S, Vicentini C, McKay S, Quinn MC, Bruxner TJ, Christ AN, Harliwong I, Idrisoglu S, McLean S, Nourse C, Nourbakhsh E, Wilson PJ, Anderson MJ, Fink JL, Newell F, Waddell N, Holmes O, Kazakoff SH, Leonard C, Wood S, Xu Q, Nagaraj SH, Amato E, Dalai I, Bersani S, Cataldo I, Dei Tos AP, Capelli P, Davì MV, Landoni L, Malpaga A, Miotto M, Whitehall VL, Leggett BA, Harris JL, Harris J, Jones MD, Humphris J, Chantrill LA, Chin V, Nagrial AM, Pajic M, Scarlett CJ, Pinho A, Rooman I, Toon C, Wu J, Pinese M, Cowley M, Barbour A, Mawson A, Humphrey ES, Colvin EK, Chou A, Lovell JA, Jamieson NB, Duthie F, Gingras MC, Fisher WE, Dagg RA, Lau LM, Lee M, Pickett HA, Reddel RR, Samra JS, Kench JG, Merrett ND, Epari K, Nguyen NQ, Zeps N, Falconi M, Simbolo M, Butturini G, Van Buren G, Partelli S, Fassan M; Australian Pancreatic Cancer Genome Initiative, Khanna KK, Gill AJ, Wheeler DA, Gibbs RA, Musgrove EA, Bassi C, Tortora G, Pederzoli P, Pearson JV, Waddell N, Biankin AV, Grimmond SM.

Nature. 2017 Mar 2;543(7643):65-71. doi: 10.1038/nature21063. Epub 2017 Feb 15. Erratum in: Nature. 2017 Sep 27;:.

PMID:
28199314
3.

Corrigendum: Whole-genome characterization of chemoresistant ovarian cancer.

Patch AM, Christie EL, Etemadmoghadam D, Garsed DW, George J, Fereday S, Nones K, Cowin P, Alsop K, Bailey PJ, Kassahn KS, Newell F, Quinn MC, Kazakoff S, Quek K, Wilhelm-Benartzi C, Curry E, Leong HS; Australian Ovarian Cancer Study Group, Hamilton A, Mileshkin L, Au-Yeung G, Kennedy C, Hung J, Chiew YE, Harnett P, Friedlander M, Quinn M, Pyman J, Cordner S, O'Brien P, Leditschke J, Young G, Strachan K, Waring P, Azar W, Mitchell C, Traficante N, Hendley J, Thorne H, Shackleton M, Miller DK, Arnau GM, Tothill RW, Holloway TP, Semple T, Harliwong I, Nourse C, Nourbakhsh E, Manning S, Idrisoglu S, Bruxner TJ, Christ AN, Poudel B, Holmes O, Anderson M, Leonard C, Lonie A, Hall N, Wood S, Taylor DF, Xu Q, Fink JL, Waddell N, Drapkin R, Stronach E, Gabra H, Brown R, Jewell A, Nagaraj SH, Markham E, Wilson PJ, Ellul J, McNally O, Doyle MA, Vedururu R, Stewart C, Lengyel E, Pearson JV, Waddell N, deFazio A, Grimmond SM, Bowtell DD.

Nature. 2015 Nov 19;527(7578):398. doi: 10.1038/nature15716. Epub 2015 Oct 21. No abstract available.

PMID:
26503049
4.

Whole-genome characterization of chemoresistant ovarian cancer.

Patch AM, Christie EL, Etemadmoghadam D, Garsed DW, George J, Fereday S, Nones K, Cowin P, Alsop K, Bailey PJ, Kassahn KS, Newell F, Quinn MC, Kazakoff S, Quek K, Wilhelm-Benartzi C, Curry E, Leong HS; Australian Ovarian Cancer Study Group, Hamilton A, Mileshkin L, Au-Yeung G, Kennedy C, Hung J, Chiew YE, Harnett P, Friedlander M, Quinn M, Pyman J, Cordner S, O'Brien P, Leditschke J, Young G, Strachan K, Waring P, Azar W, Mitchell C, Traficante N, Hendley J, Thorne H, Shackleton M, Miller DK, Arnau GM, Tothill RW, Holloway TP, Semple T, Harliwong I, Nourse C, Nourbakhsh E, Manning S, Idrisoglu S, Bruxner TJ, Christ AN, Poudel B, Holmes O, Anderson M, Leonard C, Lonie A, Hall N, Wood S, Taylor DF, Xu Q, Fink JL, Waddell N, Drapkin R, Stronach E, Gabra H, Brown R, Jewell A, Nagaraj SH, Markham E, Wilson PJ, Ellul J, McNally O, Doyle MA, Vedururu R, Stewart C, Lengyel E, Pearson JV, Waddell N, deFazio A, Grimmond SM, Bowtell DD.

Nature. 2015 May 28;521(7553):489-94. doi: 10.1038/nature14410. Erratum in: Nature. 2015 Nov 19;527(7578):398.

PMID:
26017449
5.

PGTools: A Software Suite for Proteogenomic Data Analysis and Visualization.

Nagaraj SH, Waddell N, Madugundu AK, Wood S, Jones A, Mandyam RA, Nones K, Pearson JV, Grimmond SM.

J Proteome Res. 2015 May 1;14(5):2255-66. doi: 10.1021/acs.jproteome.5b00029. Epub 2015 Apr 17.

PMID:
25760677
6.

Cloning and tissue distribution of novel splice variants of the ovine ghrelin gene.

Menzies M, Seim I, Josh P, Nagaraj SH, Lees M, Walpole C, Chopin LK, Colgrave M, Ingham A.

BMC Vet Res. 2014 Sep 6;10:211. doi: 10.1186/s12917-014-0211-x.

7.

Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-algorithmic pipeline.

Kumar D, Yadav AK, Kadimi PK, Nagaraj SH, Grimmond SM, Dash D.

Mol Cell Proteomics. 2013 Nov;12(11):3388-97. doi: 10.1074/mcp.M112.027169. Epub 2013 Jul 23.

8.

Gene network analyses of first service conception in Brangus heifers: use of genome and trait associations, hypothalamic-transcriptome information, and transcription factors.

Fortes MR, Snelling WM, Reverter A, Nagaraj SH, Lehnert SA, Hawken RJ, DeAtley KL, Peters SO, Silver GA, Rincon G, Medrano JF, Islas-Trejo A, Thomas MG.

J Anim Sci. 2012 Sep;90(9):2894-906. doi: 10.2527/jas.2011-4601. Epub 2012 Jun 27.

9.

Proteomic analysis of the abomasal mucosal response following infection by the nematode, Haemonchus contortus, in genetically resistant and susceptible sheep.

Nagaraj SH, Harsha HC, Reverter A, Colgrave ML, Sharma R, Andronicos N, Hunt P, Menzies M, Lees MS, Sekhar NR, Pandey A, Ingham A.

J Proteomics. 2012 Apr 3;75(7):2141-52. doi: 10.1016/j.jprot.2012.01.016. Epub 2012 Jan 25.

PMID:
22285630
10.

Eukaryotic evolutionary transitions are associated with extreme codon bias in functionally-related proteins.

Hudson NJ, Gu Q, Nagaraj SH, Ding YS, Dalrymple BP, Reverter A.

PLoS One. 2011;6(9):e25457. doi: 10.1371/journal.pone.0025457. Epub 2011 Sep 23.

11.

A single nucleotide polymorphism-derived regulatory gene network underlying puberty in 2 tropical breeds of beef cattle.

Fortes MR, Reverter A, Nagaraj SH, Zhang Y, Jonsson NN, Barris W, Lehnert S, Boe-Hansen GB, Hawken RJ.

J Anim Sci. 2011 Jun;89(6):1669-83. doi: 10.2527/jas.2010-3681. Epub 2011 Feb 25.

12.
13.

Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle.

De Jager N, Hudson NJ, Reverter A, Wang YH, Nagaraj SH, Cafe LM, Greenwood PL, Barnard RT, Kongsuwan KP, Dalrymple BP.

Physiol Genomics. 2011 May 13;43(9):467-78. doi: 10.1152/physiolgenomics.00226.2010. Epub 2011 Feb 15.

PMID:
21325062
14.

Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle.

Gu Q, Nagaraj SH, Hudson NJ, Dalrymple BP, Reverter A.

BMC Genomics. 2011 Jan 12;12:23. doi: 10.1186/1471-2164-12-23.

15.

The interplay between evolution, regulation and tissue specificity in the Human Hereditary Diseasome.

Nagaraj SH, Ingham A, Reverter A.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S23. doi: 10.1186/1471-2164-11-S4-S23.

16.

Association weight matrix for the genetic dissection of puberty in beef cattle.

Fortes MR, Reverter A, Zhang Y, Collis E, Nagaraj SH, Jonsson NN, Prayaga KC, Barris W, Hawken RJ.

Proc Natl Acad Sci U S A. 2010 Aug 3;107(31):13642-7. doi: 10.1073/pnas.1002044107. Epub 2010 Jul 19.

17.

The evolution of tropical adaptation: comparing taurine and zebu cattle.

Chan EK, Nagaraj SH, Reverter A.

Anim Genet. 2010 Oct;41(5):467-77. doi: 10.1111/j.1365-2052.2010.02053.x.

PMID:
20477791
18.

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data.

Reverter A, Hudson NJ, Nagaraj SH, Pérez-Enciso M, Dalrymple BP.

Bioinformatics. 2010 Apr 1;26(7):896-904. doi: 10.1093/bioinformatics/btq051. Epub 2010 Feb 9.

PMID:
20144946
19.
20.

Proteomics analysis of the excretory/secretory component of the blood-feeding stage of the hookworm, Ancylostoma caninum.

Mulvenna J, Hamilton B, Nagaraj SH, Smyth D, Loukas A, Gorman JJ.

Mol Cell Proteomics. 2009 Jan;8(1):109-21. doi: 10.1074/mcp.M800206-MCP200. Epub 2008 Aug 26.

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