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Items: 1 to 20 of 122


Biocuration in the structure-function linkage database: the anatomy of a superfamily.

Holliday GL, Brown SD, Akiva E, Mischel D, Hicks MA, Morris JH, Huang CC, Meng EC, Pegg SC, Ferrin TE, Babbitt PC.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax006.


Acute Aortic Syndromes: Update in Current Medical Management.

Morris JH, Mix D, Cameron SJ.

Curr Treat Options Cardiovasc Med. 2017 Apr;19(4):29. doi: 10.1007/s11936-017-0523-9. Review.


An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.

Harper AF, Leuthaeuser JB, Babbitt PC, Morris JH, Ferrin TE, Poole LB, Fetrow JS.

PLoS Comput Biol. 2017 Feb 10;13(2):e1005284. doi: 10.1371/journal.pcbi.1005284. eCollection 2017 Feb.


An approach to functionally relevant clustering of the protein universe: Active site profile-based clustering of protein structures and sequences.

Knutson ST, Westwood BM, Leuthaeuser JB, Turner BE, Nguyendac D, Shea G, Kumar K, Hayden JD, Harper AF, Brown SD, Morris JH, Ferrin TE, Babbitt PC, Fetrow JS.

Protein Sci. 2017 Apr;26(4):677-699. doi: 10.1002/pro.3112. Epub 2017 Mar 8.


The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.

Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, Santos A, Doncheva NT, Roth A, Bork P, Jensen LJ, von Mering C.

Nucleic Acids Res. 2017 Jan 4;45(D1):D362-D368. doi: 10.1093/nar/gkw937. Epub 2016 Oct 18.


DASP3: identification of protein sequences belonging to functionally relevant groups.

Leuthaeuser JB, Morris JH, Harper AF, Ferrin TE, Babbitt PC, Fetrow JS.

BMC Bioinformatics. 2016 Nov 11;17(1):458.


Physical activity participation in community dwelling stroke survivors: synergy and dissonance between motivation and capability. A qualitative study.

Morris JH, Oliver T, Kroll T, Joice S, Williams B.

Physiotherapy. 2016 May 11. pii: S0031-9406(16)30021-9. doi: 10.1016/ [Epub ahead of print]


Soluble Factors Secreted by Endothelial Cells Allow for Productive and Latent HIV-1 Infection in Resting CD4+ T Cells.

Morris JH 3rd, Nguyen T, Nwadike A, Geels ML, Kamp DL, Kim BR, Boyer JD, Shen A.

AIDS Res Hum Retroviruses. 2017 Feb;33(2):110-120. doi: 10.1089/AID.2016.0058. Epub 2016 Oct 5.


The Cytoscape app article collection.

Pico AR, Bader GD, Demchak B, Guitart Pla O, Hull T, Longabaugh W, Lopes C, Lotia S, Molenaar P, Montojo J, Morris JH, Ono K, Schwikowski B, Welker D, Ideker T.

F1000Res. 2014 Jul 1;3:138. doi: 10.12688/f1000research.4642.1. eCollection 2014.


CyAnimator: Simple Animations of Cytoscape Networks.

Morris JH, Vijay D, Federowicz S, Pico AR, Ferrin TE.

Version 2. F1000Res. 2015 Aug 5 [revised 2015 Dec 30];4:482. doi: 10.12688/f1000research.6852.2. eCollection 2015.


What is orthopaedic triage? A systematic review.

Morris JH, James RE, Davey R, Waddington G.

J Eval Clin Pract. 2015 Feb;21(1):128-36. doi: 10.1111/jep.12260. Epub 2014 Nov 20. Review.


setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges.

Morris JH, Lotia S, Wu A, Doncheva NT, Albrecht M, Pico AR, Ferrin TE.

Version 2. F1000Res. 2014 Jul 1 [revised 2015 Aug 5];3:149. doi: 10.12688/f1000research.4392.2. eCollection 2014.


enhancedGraphics: a Cytoscape app for enhanced node graphics.

Morris JH, Kuchinsky A, Ferrin TE, Pico AR.

F1000Res. 2014 Jul 1;3:147. doi: 10.12688/f1000research.4460.1. eCollection 2014.


Affinity purification-mass spectrometry and network analysis to understand protein-protein interactions.

Morris JH, Knudsen GM, Verschueren E, Johnson JR, Cimermancic P, Greninger AL, Pico AR.

Nat Protoc. 2014 Nov;9(11):2539-54. doi: 10.1038/nprot.2014.164. Epub 2014 Oct 2.


Integrative visual analysis of protein sequence mutations.

Doncheva NT, Klein K, Morris JH, Wybrow M, Domingues FS, Albrecht M.

BMC Proc. 2014 Aug 28;8(Suppl 2 Proceedings of the 3rd Annual Symposium on Biologica):S2. doi: 10.1186/1753-6561-8-S2-S2. eCollection 2014.


cddApp: a Cytoscape app for accessing the NCBI conserved domain database.

Morris JH, Wu A, Yamashita RA, Marchler-Bauer A, Ferrin TE.

Bioinformatics. 2015 Jan 1;31(1):134-6. doi: 10.1093/bioinformatics/btu605. Epub 2014 Sep 10.


Biological network exploration with Cytoscape 3.

Su G, Morris JH, Demchak B, Bader GD.

Curr Protoc Bioinformatics. 2014 Sep 8;47:8.13.1-24. doi: 10.1002/0471250953.bi0813s47.


Enhancing UCSF Chimera through web services.

Huang CC, Meng EC, Morris JH, Pettersen EF, Ferrin TE.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W478-84. doi: 10.1093/nar/gku377. Epub 2014 May 26.


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