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Items: 16

1.

Defining the genetic basis of early onset hereditary spastic paraplegia using whole genome sequencing.

Kumar KR, Wali GM, Kamate M, Wali G, Minoche AE, Puttick C, Pinese M, Gayevskiy V, Dinger ME, Roscioli T, Sue CM, Cowley MJ.

Neurogenetics. 2016 Oct;17(4):265-270. Epub 2016 Sep 28.

2.

Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes.

Vlasova A, Capella-Gutiérrez S, Rendón-Anaya M, Hernández-Oñate M, Minoche AE, Erb I, Câmara F, Prieto-Barja P, Corvelo A, Sanseverino W, Westergaard G, Dohm JC, Pappas GJ Jr, Saburido-Alvarez S, Kedra D, Gonzalez I, Cozzuto L, Gómez-Garrido J, Aguilar-Morón MA, Andreu N, Aguilar OM, Garcia-Mas J, Zehnsdorf M, Vázquez MP, Delgado-Salinas A, Delaye L, Lowy E, Mentaberry A, Vianello-Brondani RP, García JL, Alioto T, Sánchez F, Himmelbauer H, Santalla M, Notredame C, Gabaldón T, Herrera-Estrella A, Guigó R.

Genome Biol. 2016 Feb 25;17:32. doi: 10.1186/s13059-016-0883-6.

3.

Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies.

Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, González-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, Rodriguez-Ales JL, Nascimento FS, Balasubramanian S, Gabaldon T, Tarver JE, Andrews S, Himmelbauer H, Hughes WO, Guigó R, Reik W, Sumner S.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):13970-5. doi: 10.1073/pnas.1515937112. Epub 2015 Oct 19.

4.

Exploiting single-molecule transcript sequencing for eukaryotic gene prediction.

Minoche AE, Dohm JC, Schneider J, Holtgräwe D, Viehöver P, Montfort M, Sörensen TR, Weisshaar B, Himmelbauer H.

Genome Biol. 2015 Sep 2;16:184. doi: 10.1186/s13059-015-0729-7.

5.

Identification of ALK gene alterations in urothelial carcinoma.

Bellmunt J, Selvarajah S, Rodig S, Salido M, de Muga S, Costa I, Bellosillo B, Werner L, Mullane S, Fay AP, O'Brien R, Barretina J, Minoche AE, Signoretti S, Montagut C, Himmelbauer H, Berman DM, Kantoff P, Choueiri TK, Rosenberg JE.

PLoS One. 2014 Aug 1;9(8):e103325. doi: 10.1371/journal.pone.0103325. eCollection 2014.

6.

Cytosine methylation of an ancient satellite family in the wild beet Beta procumbens.

Schmidt M, Hense S, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T, Zakrzewski F.

Cytogenet Genome Res. 2014;143(1-3):157-67. doi: 10.1159/000363485. Epub 2014 Jun 27.

PMID:
24994030
7.

Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades.

Heitkam T, Holtgräwe D, Dohm JC, Minoche AE, Himmelbauer H, Weisshaar B, Schmidt T.

Plant J. 2014 Aug;79(3):385-97. doi: 10.1111/tpj.12565. Epub 2014 Jul 2.

8.

The CHH motif in sugar beet satellite DNA: a modulator for cytosine methylation.

Zakrzewski F, Schubert V, Viehoever P, Minoche AE, Dohm JC, Himmelbauer H, Weisshaar B, Schmidt T.

Plant J. 2014 Jun;78(6):937-50. doi: 10.1111/tpj.12519. Epub 2014 May 21.

9.

Differential expression patterns of non-symbiotic hemoglobins in sugar beet (Beta vulgaris ssp. vulgaris).

Leiva-Eriksson N, Pin PA, Kraft T, Dohm JC, Minoche AE, Himmelbauer H, Bülow L.

Plant Cell Physiol. 2014 Apr;55(4):834-44. doi: 10.1093/pcp/pcu027. Epub 2014 Jan 30.

PMID:
24486763
10.

The genome of the recently domesticated crop plant sugar beet (Beta vulgaris).

Dohm JC, Minoche AE, Holtgräwe D, Capella-Gutiérrez S, Zakrzewski F, Tafer H, Rupp O, Sörensen TR, Stracke R, Reinhardt R, Goesmann A, Kraft T, Schulz B, Stadler PF, Schmidt T, Gabaldón T, Lehrach H, Weisshaar B, Himmelbauer H.

Nature. 2014 Jan 23;505(7484):546-9. doi: 10.1038/nature12817. Epub 2013 Dec 18.

PMID:
24352233
11.

Architecture and evolution of a minute plant genome.

Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, Himmelbauer H, Minoche AE, Xu S, Lynch M, Oropeza-Aburto A, Cervantes-Pérez SA, de Jesús Ortega-Estrada M, Cervantes-Luevano JI, Michael TP, Mockler T, Bryant D, Herrera-Estrella A, Albert VA, Herrera-Estrella L.

Nature. 2013 Jun 6;498(7452):94-8. doi: 10.1038/nature12132. Epub 2013 May 12.

12.

Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration.

Weber B, Heitkam T, Holtgräwe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T.

Mob DNA. 2013 Mar 1;4(1):8. doi: 10.1186/1759-8753-4-8.

13.

Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome.

Wollrab C, Heitkam T, Holtgräwe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T.

Plant J. 2012 Nov;72(4):636-51. doi: 10.1111/j.1365-313X.2012.05107.x. Epub 2012 Sep 24.

14.

Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives.

Menzel G, Krebs C, Diez M, Holtgräwe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T.

Plant Mol Biol. 2012 Mar;78(4-5):393-405. doi: 10.1007/s11103-011-9872-z. Epub 2012 Jan 13.

PMID:
22246381
15.

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems.

Minoche AE, Dohm JC, Himmelbauer H.

Genome Biol. 2011 Nov 8;12(11):R112. doi: 10.1186/gb-2011-12-11-r112.

16.

Epigenetic profiling of heterochromatic satellite DNA.

Zakrzewski F, Weisshaar B, Fuchs J, Bannack E, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T.

Chromosoma. 2011 Aug;120(4):409-22. doi: 10.1007/s00412-011-0325-x. Epub 2011 May 19.

PMID:
21594600

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