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Items: 1 to 20 of 28

1.

A comprehensive comparison of general RNA-RNA interaction prediction methods.

Lai D, Meyer IM.

Nucleic Acids Res. 2016 Apr 20;44(7):e61. doi: 10.1093/nar/gkv1477.

3.

Four RNA families with functional transient structures.

Zhu JY, Meyer IM.

RNA Biol. 2015;12(1):5-20. doi: 10.1080/15476286.2015.1008373.

4.

e-RNA: a collection of web servers for comparative RNA structure prediction and visualisation.

Lai D, Meyer IM.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W373-6. doi: 10.1093/nar/gku292.

5.

On the importance of cotranscriptional RNA structure formation.

Lai D, Proctor JR, Meyer IM.

RNA. 2013 Nov;19(11):1461-73. doi: 10.1261/rna.037390.112. Review.

6.

Transient RNA structure features are evolutionarily conserved and can be computationally predicted.

Zhu JY, Steif A, Proctor JR, Meyer IM.

Nucleic Acids Res. 2013 Jul;41(12):6273-85. doi: 10.1093/nar/gkt319.

7.

COFOLD: an RNA secondary structure prediction method that takes co-transcriptional folding into account.

Proctor JR, Meyer IM.

Nucleic Acids Res. 2013 May;41(9):e102. doi: 10.1093/nar/gkt174.

8.

The hok mRNA family.

Steif A, Meyer IM.

RNA Biol. 2012 Dec;9(12):1399-404. doi: 10.4161/rna.22746.

PMID:
23324554
9.

The clonal and mutational evolution spectrum of primary triple-negative breast cancers.

Shah SP, Roth A, Goya R, Oloumi A, Ha G, Zhao Y, Turashvili G, Ding J, Tse K, Haffari G, Bashashati A, Prentice LM, Khattra J, Burleigh A, Yap D, Bernard V, McPherson A, Shumansky K, Crisan A, Giuliany R, Heravi-Moussavi A, Rosner J, Lai D, Birol I, Varhol R, Tam A, Dhalla N, Zeng T, Ma K, Chan SK, Griffith M, Moradian A, Cheng SW, Morin GB, Watson P, Gelmon K, Chia S, Chin SF, Curtis C, Rueda OM, Pharoah PD, Damaraju S, Mackey J, Hoon K, Harkins T, Tadigotla V, Sigaroudinia M, Gascard P, Tlsty T, Costello JF, Meyer IM, Eaves CJ, Wasserman WW, Jones S, Huntsman D, Hirst M, Caldas C, Marra MA, Aparicio S.

Nature. 2012 Apr 4;486(7403):395-9. doi: 10.1038/nature10933.

10.

R-CHIE: a web server and R package for visualizing RNA secondary structures.

Lai D, Proctor JR, Zhu JY, Meyer IM.

Nucleic Acids Res. 2012 Jul;40(12):e95. doi: 10.1093/nar/gks241.

11.

Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma.

Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA.

Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351.

12.
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14.

HMMCONVERTER 1.0: a toolbox for hidden Markov models.

Lam TY, Meyer IM.

Nucleic Acids Res. 2009 Nov;37(21):e139. doi: 10.1093/nar/gkp662.

15.

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.

Schöning JC, Streitner C, Meyer IM, Gao Y, Staiger D.

Nucleic Acids Res. 2008 Dec;36(22):6977-87. doi: 10.1093/nar/gkn847.

16.

The genome of the simian and human malaria parasite Plasmodium knowlesi.

Pain A, Böhme U, Berry AE, Mungall K, Finn RD, Jackson AP, Mourier T, Mistry J, Pasini EM, Aslett MA, Balasubrammaniam S, Borgwardt K, Brooks K, Carret C, Carver TJ, Cherevach I, Chillingworth T, Clark TG, Galinski MR, Hall N, Harper D, Harris D, Hauser H, Ivens A, Janssen CS, Keane T, Larke N, Lapp S, Marti M, Moule S, Meyer IM, Ormond D, Peters N, Sanders M, Sanders S, Sargeant TJ, Simmonds M, Smith F, Squares R, Thurston S, Tivey AR, Walker D, White B, Zuiderwijk E, Churcher C, Quail MA, Cowman AF, Turner CM, Rajandream MA, Kocken CH, Thomas AW, Newbold CI, Barrell BG, Berriman M.

Nature. 2008 Oct 9;455(7214):799-803. doi: 10.1038/nature07306.

17.

Predicting novel RNA-RNA interactions.

Meyer IM.

Curr Opin Struct Biol. 2008 Jun;18(3):387-93. doi: 10.1016/j.sbi.2008.03.006. Review.

PMID:
18485695
18.

A cross-species comparison of X-chromosome inactivation in Eutheria.

Yen ZC, Meyer IM, Karalic S, Brown CJ.

Genomics. 2007 Oct;90(4):453-63.

20.

A practical guide to the art of RNA gene prediction.

Meyer IM.

Brief Bioinform. 2007 Nov;8(6):396-414. Review.

PMID:
17483123
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