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Items: 19

1.

White Matter Deterioration May Foreshadow Impairment of Emotional Valence Determination in Early-Stage Dementia of the Alzheimer Type.

Rajmohan R, Anderson RC, Fang D, Meyer AG, Laengvejkal P, Julayanont P, Hannabas G, Linton K, Culberson J, Khan HM, De Toledo J, Reddy PH, O'Boyle M.

Front Aging Neurosci. 2017 Mar 1;9:37. doi: 10.3389/fnagi.2017.00037. eCollection 2017.

2.
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Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes.

Jack BR, Meyer AG, Echave J, Wilke CO.

PLoS Biol. 2016 May 3;14(5):e1002452. doi: 10.1371/journal.pbio.1002452. eCollection 2016 May.

4.

Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak.

Meyer AG, Spielman SJ, Bedford T, Wilke CO.

Virus Evol. 2015 Jan;1(1). pii: vev006. Epub 2015 Jan 1.

5.

The utility of protein structure as a predictor of site-wise dN/dS varies widely among HIV-1 proteins.

Meyer AG, Wilke CO.

J R Soc Interface. 2015 Oct 6;12(111):20150579. doi: 10.1098/rsif.2015.0579.

6.

Computational and Functional Analysis of the Virus-Receptor Interface Reveals Host Range Trade-Offs in New World Arenaviruses.

Kerr SA, Jackson EL, Lungu OI, Meyer AG, Demogines A, Ellington AD, Georgiou G, Wilke CO, Sawyer SL.

J Virol. 2015 Nov;89(22):11643-53. doi: 10.1128/JVI.01408-15. Epub 2015 Sep 9.

7.

Geometric Constraints Dominate the Antigenic Evolution of Influenza H3N2 Hemagglutinin.

Meyer AG, Wilke CO.

PLoS Pathog. 2015 May 28;11(5):e1004940. doi: 10.1371/journal.ppat.1004940. eCollection 2015 May.

8.

Evolution. Systematic humanization of yeast genes reveals conserved functions and genetic modularity.

Kachroo AH, Laurent JM, Yellman CM, Meyer AG, Wilke CO, Marcotte EM.

Science. 2015 May 22;348(6237):921-5. doi: 10.1126/science.aaa0769.

9.

Predicting growth conditions from internal metabolic fluxes in an in-silico model of E. coli.

Sridhara V, Meyer AG, Rai P, Barrick JE, Ravikumar P, Segrè D, Wilke CO.

PLoS One. 2014 Dec 12;9(12):e114608. doi: 10.1371/journal.pone.0114608. eCollection 2014.

10.

Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq.

Barrick JE, Colburn G, Deatherage DE, Traverse CC, Strand MD, Borges JJ, Knoester DB, Reba A, Meyer AG.

BMC Genomics. 2014 Nov 29;15:1039. doi: 10.1186/1471-2164-15-1039.

11.

Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design.

Shahmoradi A, Sydykova DK, Spielman SJ, Jackson EL, Dawson ET, Meyer AG, Wilke CO.

J Mol Evol. 2014 Oct;79(3-4):130-42. doi: 10.1007/s00239-014-9644-x. Epub 2014 Sep 13.

12.

Analyzing machupo virus-receptor binding by molecular dynamics simulations.

Meyer AG, Sawyer SL, Ellington AD, Wilke CO.

PeerJ. 2014 Feb 27;2:e266. doi: 10.7717/peerj.266. eCollection 2014.

13.

Maximum allowed solvent accessibilites of residues in proteins.

Tien MZ, Meyer AG, Sydykova DK, Spielman SJ, Wilke CO.

PLoS One. 2013 Nov 21;8(11):e80635. doi: 10.1371/journal.pone.0080635. eCollection 2013.

14.

PeptideBuilder: A simple Python library to generate model peptides.

Tien MZ, Sydykova DK, Meyer AG, Wilke CO.

PeerJ. 2013 May 21;1:e80. doi: 10.7717/peerj.80. Print 2013.

15.

Cross-species comparison of site-specific evolutionary-rate variation in influenza haemagglutinin.

Meyer AG, Dawson ET, Wilke CO.

Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120334. doi: 10.1098/rstb.2012.0334. Print 2013 Mar 19.

16.

Integrating sequence variation and protein structure to identify sites under selection.

Meyer AG, Wilke CO.

Mol Biol Evol. 2013 Jan;30(1):36-44. doi: 10.1093/molbev/mss217. Epub 2012 Sep 12.

17.

Modeling coding-sequence evolution within the context of residue solvent accessibility.

Scherrer MP, Meyer AG, Wilke CO.

BMC Evol Biol. 2012 Sep 12;12:179. doi: 10.1186/1471-2148-12-179.

18.

Antiviral activity of gliotoxin, gentian violet and brilliant green against Nipah and Hendra virus in vitro.

Aljofan M, Sganga ML, Lo MK, Rootes CL, Porotto M, Meyer AG, Saubern S, Moscona A, Mungall BA.

Virol J. 2009 Nov 4;6:187. doi: 10.1186/1743-422X-6-187.

19.

Characteristics of Nipah virus and Hendra virus replication in different cell lines and their suitability for antiviral screening.

Aljofan M, Saubern S, Meyer AG, Marsh G, Meers J, Mungall BA.

Virus Res. 2009 Jun;142(1-2):92-9. doi: 10.1016/j.virusres.2009.01.014. Epub 2009 Jan 29.

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