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Items: 1 to 20 of 24


Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives.

Strickler SR, Bombarely A, Munkvold JD, York T, Menda N, Martin GB, Mueller LA.

PeerJ. 2015 Feb 26;3:e793. doi: 10.7717/peerj.793.


An ontology approach to comparative phenomics in plants.

Oellrich A, Walls RL, Cannon EK, Cannon SB, Cooper L, Gardiner J, Gkoutos GV, Harper L, He M, Hoehndorf R, Jaiswal P, Kalberer SR, Lloyd JP, Meinke D, Menda N, Moore L, Nelson RT, Pujar A, Lawrence CJ, Huala E.

Plant Methods. 2015 Feb 25;11:10. doi: 10.1186/s13007-015-0053-y.


solGS: a web-based tool for genomic selection.

Tecle IY, Edwards JD, Menda N, Egesi C, Rabbi IY, Kulakow P, Kawuki R, Jannink JL, Mueller LA.

BMC Bioinformatics. 2014 Dec 14;15:398. doi: 10.1186/s12859-014-0398-7.


The Sol Genomics Network (SGN)--from genotype to phenotype to breeding.

Fernandez-Pozo N, Menda N, Edwards JD, Saha S, Tecle IY, Strickler SR, Bombarely A, Fisher-York T, Pujar A, Foerster H, Yan A, Mueller LA.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1036-41. doi: 10.1093/nar/gku1195.


Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins.

Menda N, Strickler SR, Edwards JD, Bombarely A, Dunham DM, Martin GB, Mejia L, Hutton SF, Havey MJ, Maxwell DP, Mueller LA.

BMC Plant Biol. 2014 Oct 28;14:287. doi: 10.1186/s12870-014-0287-2.


From manual curation to visualization of gene families and networks across Solanaceae plant species.

Pujar A, Menda N, Bombarely A, Edwards JD, Strickler SR, Mueller LA.

Database (Oxford). 2013 May 15;2013:bat028. doi: 10.1093/database/bat028.


The plant ontology as a tool for comparative plant anatomy and genomic analyses.

Cooper L, Walls RL, Elser J, Gandolfo MA, Stevenson DW, Smith B, Preece J, Athreya B, Mungall CJ, Rensing S, Hiss M, Lang D, Reski R, Berardini TZ, Li D, Huala E, Schaeffer M, Menda N, Arnaud E, Shrestha R, Yamazaki Y, Jaiswal P.

Plant Cell Physiol. 2013 Feb;54(2):e1. doi: 10.1093/pcp/pcs163.


The tomato genome sequence provides insights into fleshy fruit evolution.

Tomato Genome Consortium..

Nature. 2012 May 30;485(7400):635-41. doi: 10.1038/nature11119.


The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data.

Jung S, Menda N, Redmond S, Buels RM, Friesen M, Bendana Y, Sanderson LA, Lapp H, Lee T, MacCallum B, Bett KE, Cain S, Clements D, Mueller LA, Main D.

Database (Oxford). 2011 Nov 26;2011:bar051. doi: 10.1093/database/bar051.


solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database.

Tecle IY, Menda N, Buels RM, van der Knaap E, Mueller LA.

BMC Bioinformatics. 2010 Oct 21;11:525. doi: 10.1186/1471-2105-11-525.


The Sol Genomics Network ( growing tomatoes using Perl.

Bombarely A, Menda N, Tecle IY, Buels RM, Strickler S, Fischer-York T, Pujar A, Leto J, Gosselin J, Mueller LA.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1149-55. doi: 10.1093/nar/gkq866.


A community-based annotation framework for linking solanaceae genomes with phenomes.

Menda N, Buels RM, Tecle I, Mueller LA.

Plant Physiol. 2008 Aug;147(4):1788-99. doi: 10.1104/pp.108.119560.


The SGN comparative map viewer.

Mueller LA, Mills AA, Skwarecki B, Buels RM, Menda N, Tanksley SD.

Bioinformatics. 2008 Feb 1;24(3):422-3. doi: 10.1093/bioinformatics/btm597.


Regulation of LANCEOLATE by miR319 is required for compound-leaf development in tomato.

Ori N, Cohen AR, Etzioni A, Brand A, Yanai O, Shleizer S, Menda N, Amsellem Z, Efroni I, Pekker I, Alvarez JP, Blum E, Zamir D, Eshed Y.

Nat Genet. 2007 Jun;39(6):787-91.


Overdominant quantitative trait loci for yield and fitness in tomato.

Semel Y, Nissenbaum J, Menda N, Zinder M, Krieger U, Issman N, Pleban T, Lippman Z, Gur A, Zamir D.

Proc Natl Acad Sci U S A. 2006 Aug 29;103(35):12981-6.


The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond.

Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD.

Plant Physiol. 2005 Jul;138(3):1310-7.


Flower proteome: changes in protein spectrum during the advanced stages of rose petal development.

Dafny-Yelin M, Guterman I, Menda N, Ovadis M, Shalit M, Pichersky E, Zamir D, Lewinsohn E, Adam Z, Weiss D, Vainstein A.

Planta. 2005 Sep;222(1):37-46.


In silico screening of a saturated mutation library of tomato.

Menda N, Semel Y, Peled D, Eshed Y, Zamir D.

Plant J. 2004 Jun;38(5):861-72.


Volatile ester formation in roses. Identification of an acetyl-coenzyme A. Geraniol/Citronellol acetyltransferase in developing rose petals.

Shalit M, Guterman I, Volpin H, Bar E, Tamari T, Menda N, Adam Z, Zamir D, Vainstein A, Weiss D, Pichersky E, Lewinsohn E.

Plant Physiol. 2003 Apr;131(4):1868-76.

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