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Items: 1 to 20 of 26

1.

Genetic Basis for Red Coloration in Birds.

Lopes RJ, Johnson JD, Toomey MB, Ferreira MS, Araujo PM, Melo-Ferreira J, Andersson L, Hill GE, Corbo JC, Carneiro M.

Curr Biol. 2016 Jun 6;26(11):1427-34. doi: 10.1016/j.cub.2016.03.076.

PMID:
27212400
2.

Endogenization of mouse mammary tumor virus (MMTV)-like elements in genomes of pikas (Ochotona sp.).

Lemos de Matos A, de Sousa-Pereira P, Lissovsky AA, van der Loo W, Melo-Ferreira J, Cui J, Esteves PJ.

Virus Res. 2015 Dec 2;210:22-6. doi: 10.1016/j.virusres.2015.06.021.

PMID:
26151606
3.

The phylogeny of pikas (Ochotona) inferred from a multilocus coalescent approach.

Melo-Ferreira J, Lemos de Matos A, Areal H, Lissovsky AA, Carneiro M, Esteves PJ.

Mol Phylogenet Evol. 2015 Mar;84:240-4. doi: 10.1016/j.ympev.2015.01.004.

PMID:
25637497
4.

Sequencing of Sylvilagus VDJ genes reveals a new VHa allelic lineage and shows that ancient VH lineages were retained differently in leporids.

Pinheiro A, Melo-Ferreira J, Abrantes J, Martinelli N, Lavazza A, Alves PC, Gortázar C, Esteves PJ.

Immunogenetics. 2014 Dec;66(12):719-26. doi: 10.1007/s00251-014-0807-0.

PMID:
25267061
5.

The genomic architecture of population divergence between subspecies of the European rabbit.

Carneiro M, Albert FW, Afonso S, Pereira RJ, Burbano H, Campos R, Melo-Ferreira J, Blanco-Aguiar JA, Villafuerte R, Nachman MW, Good JM, Ferrand N.

PLoS Genet. 2014 Aug 28;10(8):e1003519. doi: 10.1371/journal.pgen.1003519.

6.

The hidden history of the snowshoe hare, Lepus americanus: extensive mitochondrial DNA introgression inferred from multilocus genetic variation.

Melo-Ferreira J, Seixas FA, Cheng E, Mills LS, Alves PC.

Mol Ecol. 2014 Sep;23(18):4617-30. doi: 10.1111/mec.12886.

PMID:
25113393
7.

Conservation implications of the evolutionary history and genetic diversity hotspots of the snowshoe hare.

Cheng E, Hodges KE, Melo-Ferreira J, Alves PC, Mills LS.

Mol Ecol. 2014 Jun;23(12):2929-42. doi: 10.1111/mec.12790.

PMID:
24814937
8.

The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression.

Melo-Ferreira J, Vilela J, Fonseca MM, da Fonseca RR, Boursot P, Alves PC.

Genome Biol Evol. 2014 Apr;6(4):886-96. doi: 10.1093/gbe/evu059.

9.

Molecular and ecological signs of mitochondrial adaptation: consequences for introgression?

Boratyński Z, Melo-Ferreira J, Alves PC, Berto S, Koskela E, Pentikäinen OT, Tarroso P, Ylilauri M, Mappes T.

Heredity (Edinb). 2014 Oct;113(4):277-86. doi: 10.1038/hdy.2014.28.

10.

Advances in Ecological Speciation: an integrative approach.

Faria R, Renaut S, Galindo J, Pinho C, Melo-Ferreira J, Melo M, Jones F, Salzburger W, Schluter D, Butlin R.

Mol Ecol. 2014 Feb;23(3):513-21. doi: 10.1111/mec.12616.

PMID:
24354648
11.

Not so pseudo: the evolutionary history of protein phosphatase 1 regulatory subunit 2 and related pseudogenes.

Korrodi-Gregório L, Abrantes J, Muller T, Melo-Ferreira J, Marcus K, da Cruz e Silva OA, Fardilha M, Esteves PJ.

BMC Evol Biol. 2013 Nov 6;13:242. doi: 10.1186/1471-2148-13-242.

12.

Home-loving boreal hare mitochondria survived several invasions in Iberia: the relative roles of recurrent hybridisation and allele surfing.

Melo-Ferreira J, Farelo L, Freitas H, Suchentrunk F, Boursot P, Alves PC.

Heredity (Edinb). 2014 Mar;112(3):265-73. doi: 10.1038/hdy.2013.102.

13.

Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap.

Gayral P, Melo-Ferreira J, Glémin S, Bierne N, Carneiro M, Nabholz B, Lourenco JM, Alves PC, Ballenghien M, Faivre N, Belkhir K, Cahais V, Loire E, Bernard A, Galtier N.

PLoS Genet. 2013 Apr;9(4):e1003457. doi: 10.1371/journal.pgen.1003457.

14.

Past, present and future distributions of an Iberian Endemic, Lepus granatensis: ecological and evolutionary clues from species distribution models.

Acevedo P, Melo-Ferreira J, Real R, Alves PC.

PLoS One. 2012;7(12):e51529. doi: 10.1371/journal.pone.0051529.

15.

Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia.

Paupério J, Herman JS, Melo-Ferreira J, Jaarola M, Alves PC, Searle JB.

Mol Ecol. 2012 Dec;21(24):6015-32. doi: 10.1111/mec.12024.

PMID:
23163319
16.

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.

Cahais V, Gayral P, Tsagkogeorga G, Melo-Ferreira J, Ballenghien M, Weinert L, Chiari Y, Belkhir K, Ranwez V, Galtier N.

Mol Ecol Resour. 2012 Sep;12(5):834-45. doi: 10.1111/j.1755-0998.2012.03148.x.

PMID:
22540679
17.

Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome.

Carneiro M, Albert FW, Melo-Ferreira J, Galtier N, Gayral P, Blanco-Aguiar JA, Villafuerte R, Nachman MW, Ferrand N.

Mol Biol Evol. 2012 Jul;29(7):1837-49. doi: 10.1093/molbev/mss025.

18.

Recurrent introgression of mitochondrial DNA among hares (Lepus spp.) revealed by species-tree inference and coalescent simulations.

Melo-Ferreira J, Boursot P, Carneiro M, Esteves PJ, Farelo L, Alves PC.

Syst Biol. 2012 May;61(3):367-81. doi: 10.1093/sysbio/syr114.

PMID:
22201159
19.

Introgression of mitochondrial DNA among Myodes voles: consequences for energetics?

Boratyński Z, Alves PC, Berto S, Koskela E, Mappes T, Melo-Ferreira J.

BMC Evol Biol. 2011 Dec 9;11:355. doi: 10.1186/1471-2148-11-355.

20.

Interspecific X-chromosome and mitochondrial DNA introgression in the Iberian hare: selection or allele surfing?

Melo-Ferreira J, Alves PC, Rocha J, Ferrand N, Boursot P.

Evolution. 2011 Jul;65(7):1956-68. doi: 10.1111/j.1558-5646.2011.01261.x.

PMID:
21729051
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