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Items: 9

1.

The complex domain architecture of SAMD9 family proteins, predicted STAND-like NTPases, suggests new links to inflammation and apoptosis.

Mekhedov SL, Makarova KS, Koonin EV.

Biol Direct. 2017 May 25;12(1):13. doi: 10.1186/s13062-017-0185-2.

2.

Myosin-driven transport network in plants.

Kurth EG, Peremyslov VV, Turner HL, Makarova KS, Iranzo J, Mekhedov SL, Koonin EV, Dolja VV.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):E1385-E1394. doi: 10.1073/pnas.1620577114. Epub 2017 Jan 17.

3.

Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes.

Galperin MY, Mekhedov SL, Puigbo P, Smirnov S, Wolf YI, Rigden DJ.

Environ Microbiol. 2012 Nov;14(11):2870-90. doi: 10.1111/j.1462-2920.2012.02841.x. Epub 2012 Aug 13.

4.

The deep archaeal roots of eukaryotes.

Yutin N, Makarova KS, Mekhedov SL, Wolf YI, Koonin EV.

Mol Biol Evol. 2008 Aug;25(8):1619-30. doi: 10.1093/molbev/msn108. Epub 2008 May 6.

5.

The cyanobacterial genome core and the origin of photosynthesis.

Mulkidjanian AY, Koonin EV, Makarova KS, Mekhedov SL, Sorokin A, Wolf YI, Dufresne A, Partensky F, Burd H, Kaznadzey D, Haselkorn R, Galperin MY.

Proc Natl Acad Sci U S A. 2006 Aug 29;103(35):13126-31. Epub 2006 Aug 21.

6.

Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell.

Makarova KS, Wolf YI, Mekhedov SL, Mirkin BG, Koonin EV.

Nucleic Acids Res. 2005 Aug 16;33(14):4626-38. Print 2005.

7.

Prevalence of intron gain over intron loss in the evolution of paralogous gene families.

Babenko VN, Rogozin IB, Mekhedov SL, Koonin EV.

Nucleic Acids Res. 2004 Jul 14;32(12):3724-33. Print 2004.

8.

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

9.

The COG database: an updated version includes eukaryotes.

Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

BMC Bioinformatics. 2003 Sep 11;4:41. Epub 2003 Sep 11.

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