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Items: 1 to 20 of 60

1.

Design and Experimental Validation of Small Activating RNAs Targeting an Exogenous Promoter in Human Cells.

Harris EA, Buzina A, Moffat J, McMillen DR.

ACS Synth Biol. 2017 Apr 21;6(4):628-637. doi: 10.1021/acssynbio.6b00125. Epub 2017 Jan 17.

PMID:
28033709
2.

Design principles for the analysis and construction of robustly homeostatic biological networks.

Tang ZF, McMillen DR.

J Theor Biol. 2016 Nov 7;408:274-89. doi: 10.1016/j.jtbi.2016.06.036. Epub 2016 Jul 1.

PMID:
27378006
3.

Automated inference procedure for the determination of cell growth parameters.

Harris EA, Koh EJ, Moffat J, McMillen DR.

Phys Rev E. 2016 Jan;93(1):012402. doi: 10.1103/PhysRevE.93.012402. Epub 2016 Jan 7.

PMID:
26871096
4.

An Escherichia coli system for evolving improved light-controlled DNA-binding proteins.

Mazumder M, Brechun KE, Kim YB, Hoffmann SA, Chen YY, Keiski CL, Arndt KM, McMillen DR, Woolley GA.

Protein Eng Des Sel. 2015 Sep;28(9):293-302. doi: 10.1093/protein/gzv033. Epub 2015 Aug 5.

PMID:
26245690
5.

Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast.

Mazumder M, McMillen DR.

Nucleic Acids Res. 2014 Aug;42(14):9514-22. doi: 10.1093/nar/gku651. Epub 2014 Jul 23.

6.

Tuning response curves for synthetic biology.

Ang J, Harris E, Hussey BJ, Kil R, McMillen DR.

ACS Synth Biol. 2013 Oct 18;2(10):547-67. doi: 10.1021/sb4000564. Epub 2013 Sep 3.

7.

Physical constraints on biological integral control design for homeostasis and sensory adaptation.

Ang J, McMillen DR.

Biophys J. 2013 Jan 22;104(2):505-15. doi: 10.1016/j.bpj.2012.12.015.

8.

Assessing gender equity in a large academic department of pediatrics.

Rotbart HA, McMillen D, Taussig H, Daniels SR.

Acad Med. 2012 Jan;87(1):98-104. doi: 10.1097/ACM.0b013e31823be028.

PMID:
22104061
9.

Probing the input-output behavior of biochemical and genetic systems system identification methods from control theory.

Ang J, Ingalls B, McMillen D.

Methods Enzymol. 2011;487:279-317. doi: 10.1016/B978-0-12-381270-4.00010-X. Review.

PMID:
21187229
10.

An active intracellular device to prevent lethal disease outcomes in virus-infected bacterial cells.

Bagh S, Mandal M, Ang J, McMillen DR.

Biotechnol Bioeng. 2011 Mar;108(3):645-54. doi: 10.1002/bit.22969. Epub 2010 Dec 1.

PMID:
20967799
11.

Minimal genetic device with multiple tunable functions.

Bagh S, Mandal M, McMillen DR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Aug;82(2 Pt 1):021911. Epub 2010 Aug 12.

PMID:
20866841
12.

Considerations for using integral feedback control to construct a perfectly adapting synthetic gene network.

Ang J, Bagh S, Ingalls BP, McMillen DR.

J Theor Biol. 2010 Oct 21;266(4):723-38. doi: 10.1016/j.jtbi.2010.07.034. Epub 2010 Aug 3.

PMID:
20688080
13.

Increasing the efficiency of bacterial transcription simulations: when to exclude the genome without loss of accuracy.

Iafolla MA, Dong GQ, McMillen DR.

BMC Bioinformatics. 2008 Sep 12;9:373. doi: 10.1186/1471-2105-9-373.

14.

Edge enhancement and edge-enhanced correlation with photorefractive polymers.

Banerjee PP, Gad E, Hudson T, McMillen D, Abdeldayem H, Frazier D, Matsushita K.

Appl Opt. 2000 Oct 10;39(29):5337-46.

PMID:
18354530
15.

Plasmid-borne prokaryotic gene expression: sources of variability and quantitative system characterization.

Bagh S, Mazumder M, Velauthapillai T, Sardana V, Dong GQ, Movva AB, Lim LH, McMillen DR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Feb;77(2 Pt 1):021919. Epub 2008 Feb 28.

PMID:
18352063
16.

Effects of protein maturation on the noise in gene expression.

Dong GQ, McMillen DR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Feb;77(2 Pt 1):021908. Epub 2008 Feb 13.

PMID:
18352052
17.

Dark proteins: effect of inclusion body formation on quantification of protein expression.

Iafolla MA, Mazumder M, Sardana V, Velauthapillai T, Pannu K, McMillen DR.

Proteins. 2008 Sep;72(4):1233-42. doi: 10.1002/prot.22024.

PMID:
18350571
18.

TandTRAQ: an open-source tool for integrated protein identification and quantitation.

Laderas T, Bystrom C, McMillen D, Fan G, McWeeney S.

Bioinformatics. 2007 Dec 15;23(24):3394-6. Epub 2007 Sep 25.

PMID:
17895273
19.

Hair bundles are specialized for ATP delivery via creatine kinase.

Shin JB, Streijger F, Beynon A, Peters T, Gadzala L, McMillen D, Bystrom C, Van der Zee CE, Wallimann T, Gillespie PG.

Neuron. 2007 Feb 1;53(3):371-86.

20.

Simplification of stochastic chemical reaction models with fast and slow dynamics.

Dong GQ, Jakobowski L, Iafolla MA, McMillen DR.

J Biol Phys. 2007 Feb;33(1):67-95. doi: 10.1007/s10867-007-9043-2. Epub 2007 Sep 5.

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