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Items: 11

1.

Using metabarcoding to reveal and quantify plant-pollinator interactions.

Pornon A, Escaravage N, Burrus M, Holota H, Khimoun A, Mariette J, Pellizzari C, Iribar A, Etienne R, Taberlet P, Vidal M, Winterton P, Zinger L, Andalo C.

Sci Rep. 2016 Jun 3;6:27282. doi: 10.1038/srep27282.

2.

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Di Genova A, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A.

Nucleic Acids Res. 2015 Jul 1;43(W1):W589-98. doi: 10.1093/nar/gkv350. Epub 2015 Apr 20.

3.

Complete Genome Sequence of a Field Strain of Peste des Petits Ruminants Virus Isolated during 2010-2014 Epidemics in Senegal.

Salami H, Croville G, Kwiatek O, Mariette J, Klopp C, Valière S, Guérin JL, Lo M, Thiongane Y, Albina E, Libeau G.

Genome Announc. 2014 Sep 18;2(5). pii: e00772-14. doi: 10.1128/genomeA.00772-14.

4.

jvenn: an interactive Venn diagram viewer.

Bardou P, Mariette J, Escudié F, Djemiel C, Klopp C.

BMC Bioinformatics. 2014 Aug 29;15:293. doi: 10.1186/1471-2105-15-293.

5.

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.

Levasseur A, Lomascolo A, Chabrol O, Ruiz-Dueñas FJ, Boukhris-Uzan E, Piumi F, Kües U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wösten HA, Martin F, Coutinho PM, de Vries RP, Martínez AT, Klopp C, Pontarotti P, Henrissat B, Record E.

BMC Genomics. 2014 Jun 18;15:486. doi: 10.1186/1471-2164-15-486.

6.

RNAbrowse: RNA-Seq de novo assembly results browser.

Mariette J, Noirot C, Nabihoudine I, Bardou P, Hoede C, Djari A, Cabau C, Klopp C.

PLoS One. 2014 May 13;9(5):e96821. doi: 10.1371/journal.pone.0096821. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e106187.

7.

Novel avian coronavirus and fulminating disease in guinea fowl, France.

Liais E, Croville G, Mariette J, Delverdier M, Lucas MN, Klopp C, Lluch J, Donnadieu C, Guy JS, Corrand L, Ducatez MF, Guérin JL.

Emerg Infect Dis. 2014 Jan;20(1):105-8. doi: 10.3201/eid2001.130774.

8.

NG6: Integrated next generation sequencing storage and processing environment.

Mariette J, Escudié F, Allias N, Salin G, Noirot C, Thomas S, Klopp C.

BMC Genomics. 2012 Sep 9;13:462.

9.

Field monitoring of avian influenza viruses: whole-genome sequencing and tracking of neuraminidase evolution using 454 pyrosequencing.

Croville G, Soubies SM, Barbieri J, Klopp C, Mariette J, Bouchez O, Camus-Bouclainville C, Guérin JL.

J Clin Microbiol. 2012 Sep;50(9):2881-7. doi: 10.1128/JCM.01142-12. Epub 2012 Jun 20.

10.

Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota.

Serino M, Luche E, Gres S, Baylac A, Bergé M, Cenac C, Waget A, Klopp P, Iacovoni J, Klopp C, Mariette J, Bouchez O, Lluch J, Ouarné F, Monsan P, Valet P, Roques C, Amar J, Bouloumié A, Théodorou V, Burcelin R.

Gut. 2012 Apr;61(4):543-53. doi: 10.1136/gutjnl-2011-301012. Epub 2011 Nov 22.

11.

RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA.

Cros MJ, de Monte A, Mariette J, Bardou P, Grenier-Boley B, Gautheret D, Touzet H, Gaspin C.

RNA. 2011 Nov;17(11):1947-56. doi: 10.1261/rna.2844911. Epub 2011 Sep 23.

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