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Items: 11


NMRbox: A Resource for Biomolecular NMR Computation.

Maciejewski MW, Schuyler AD, Gryk MR, Moraru II, Romero PR, Ulrich EL, Eghbalnia HR, Livny M, Delaglio F, Hoch JC.

Biophys J. 2017 Apr 25;112(8):1529-1534. doi: 10.1016/j.bpj.2017.03.011.


Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins.

Yokochi M, Kobayashi N, Ulrich EL, Kinjo AR, Iwata T, Ioannidis YE, Livny M, Markley JL, Nakamura H, Kojima C, Fujiwara T.

J Biomed Semantics. 2016 May 5;7(1):16.


A machine reading system for assembling synthetic paleontological databases.

Peters SE, Zhang C, Livny M, Ré C.

PLoS One. 2014 Dec 1;9(12):e113523. doi: 10.1371/journal.pone.0113523. eCollection 2014.


High-throughput computer vision introduces the time axis to a quantitative trait map of a plant growth response.

Moore CR, Johnson LS, Kwak IY, Livny M, Broman KW, Spalding EP.

Genetics. 2013 Nov;195(3):1077-86. doi: 10.1534/genetics.113.153346. Epub 2013 Aug 26.


High-resolution human genome structure by single-molecule analysis.

Teague B, Waterman MS, Goldstein S, Potamousis K, Zhou S, Reslewic S, Sarkar D, Valouev A, Churas C, Kidd JM, Kohn S, Runnheim R, Lamers C, Forrest D, Newton MA, Eichler EE, Kent-First M, Surti U, Livny M, Schwartz DC.

Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10848-53. doi: 10.1073/pnas.0914638107. Epub 2010 Jun 1.


A single molecule scaffold for the maize genome.

Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, Forrest DK, Wise R, Ware D, Wing RA, Waterman MS, Livny M, Schwartz DC.

PLoS Genet. 2009 Nov;5(11):e1000711. doi: 10.1371/journal.pgen.1000711. Epub 2009 Nov 20.


High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs.

Livny J, Teonadi H, Livny M, Waldor MK.

PLoS One. 2008 Sep 12;3(9):e3197. doi: 10.1371/journal.pone.0003197. Erratum in: PLoS ONE. 2008;3(11). doi: 10.1371/annotation/a03e1870-1dd7-4c16-8c46-2268eeb2a50a.


An efficient algorithm for optimizing DCT quantization.

Ratnakar V, Livny M.

IEEE Trans Image Process. 2000;9(2):267-70. doi: 10.1109/83.821739.



Ulrich EL, Akutsu H, Doreleijers JF, Harano Y, Ioannidis YE, Lin J, Livny M, Mading S, Maziuk D, Miller Z, Nakatani E, Schulte CF, Tolmie DE, Kent Wenger R, Yao H, Markley JL.

Nucleic Acids Res. 2008 Jan;36(Database issue):D402-8. Epub 2007 Nov 4.


Validation of rice genome sequence by optical mapping.

Zhou S, Bechner MC, Place M, Churas CP, Pape L, Leong SA, Runnheim R, Forrest DK, Goldstein S, Livny M, Schwartz DC.

BMC Genomics. 2007 Aug 15;8:278.


RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank.

Nederveen AJ, Doreleijers JF, Vranken W, Miller Z, Spronk CA, Nabuurs SB, Güntert P, Livny M, Markley JL, Nilges M, Ulrich EL, Kaptein R, Bonvin AM.

Proteins. 2005 Jun 1;59(4):662-72.


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