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Items: 1 to 20 of 162


VAST (Volume Annotation and Segmentation Tool): Efficient Manual and Semi-Automatic Labeling of Large 3D Image Stacks.

Berger DR, Seung HS, Lichtman JW.

Front Neural Circuits. 2018 Oct 16;12:88. doi: 10.3389/fncir.2018.00088. eCollection 2018.


Lamellar projections in the endolymphatic sac act as a relief valve to regulate inner ear pressure.

Swinburne IA, Mosaliganti KR, Upadhyayula S, Liu TL, Hildebrand DGC, Tsai TY, Chen A, Al-Obeidi E, Fass AK, Malhotra S, Engert F, Lichtman JW, Kirchhausen T, Betzig E, Megason SG.

Elife. 2018 Jun 19;7. pii: e37131. doi: 10.7554/eLife.37131.


Publisher Correction: Inhibitory circuit gating of auditory critical-period plasticity.

Takesian AE, Bogart LJ, Lichtman JW, Hensch TK.

Nat Neurosci. 2018 Oct;21(10):1495. doi: 10.1038/s41593-018-0161-x.


Inhibitory circuit gating of auditory critical-period plasticity.

Takesian AE, Bogart LJ, Lichtman JW, Hensch TK.

Nat Neurosci. 2018 Feb;21(2):218-227. doi: 10.1038/s41593-017-0064-2. Epub 2018 Jan 22. Erratum in: Nat Neurosci. 2018 Oct;21(10):1495.


Digital tissue and what it may reveal about the brain.

Morgan JL, Lichtman JW.

BMC Biol. 2017 Oct 30;15(1):101. doi: 10.1186/s12915-017-0436-9. Review.


SnapShot: Tissue Clearing.

Richardson DS, Lichtman JW.

Cell. 2017 Oct 5;171(2):496-496.e1. doi: 10.1016/j.cell.2017.09.025.


Electron Microscopic Reconstruction of Functionally Identified Cells in a Neural Integrator.

Vishwanathan A, Daie K, Ramirez AD, Lichtman JW, Aksay ERF, Seung HS.

Curr Biol. 2017 Jul 24;27(14):2137-2147.e3. doi: 10.1016/j.cub.2017.06.028. Epub 2017 Jul 14.


Whole-brain serial-section electron microscopy in larval zebrafish.

Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Scott Champion A, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, Lillaney K, Burns R, Vogelstein JT, Schier AF, Lee WA, Jeong WK, Lichtman JW, Engert F.

Nature. 2017 May 18;545(7654):345-349. doi: 10.1038/nature22356. Epub 2017 May 10.


Cell diversity and network dynamics in photosensitive human brain organoids.

Quadrato G, Nguyen T, Macosko EZ, Sherwood JL, Min Yang S, Berger DR, Maria N, Scholvin J, Goldman M, Kinney JP, Boyden ES, Lichtman JW, Williams ZM, McCarroll SA, Arlotta P.

Nature. 2017 May 4;545(7652):48-53. doi: 10.1038/nature22047. Epub 2017 Apr 26.


Efficiency of Cathodoluminescence Emission by Nitrogen-Vacancy Color Centers in Nanodiamonds.

Zhang H, Glenn DR, Schalek R, Lichtman JW, Walsworth RL.

Small. 2017 Jun;13(22). doi: 10.1002/smll.201700543. Epub 2017 Apr 18.


Similar synapse elimination motifs at successive relays in the same efferent pathway during development in mice.

Sheu SH, Tapia JC, Tsuriel S, Lichtman JW.

Elife. 2017 Feb 3;6. pii: e23193. doi: 10.7554/eLife.23193.


From Cajal to Connectome and Beyond.

Swanson LW, Lichtman JW.

Annu Rev Neurosci. 2016 Jul 8;39:197-216. doi: 10.1146/annurev-neuro-071714-033954. Review.


Reconstruction of genetically identified neurons imaged by serial-section electron microscopy.

Joesch M, Mankus D, Yamagata M, Shahbazi A, Schalek R, Suissa-Peleg A, Meister M, Lichtman JW, Scheirer WJ, Sanes JR.

Elife. 2016 Jul 7;5. pii: e15015. doi: 10.7554/eLife.15015.


The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus.

Morgan JL, Berger DR, Wetzel AW, Lichtman JW.

Cell. 2016 Mar 24;165(1):192-206. doi: 10.1016/j.cell.2016.02.033.


NeuroBlocks--Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects.

Ai-Awami AK, Beyer J, Haehn D, Kasthuri N, Lichtman JW, Pfister H, Hadwiger M.

IEEE Trans Vis Comput Graph. 2016 Jan;22(1):738-46. doi: 10.1109/TVCG.2015.2467441.


Design and Evaluation of Interactive Proofreading Tools for Connectomics.

Haehn D, Knowles-Barley S, Roberts M, Beyer J, Kasthuri N, Lichtman JW, Pfister H.

IEEE Trans Vis Comput Graph. 2014 Dec;20(12):2466-75. doi: 10.1109/TVCG.2014.2346371.


NeuroLines: A Subway Map Metaphor for Visualizing Nanoscale Neuronal Connectivity.

Al-Awami AK, Beyer J, Strobelt H, Kasthuri N, Lichtman JW, Pfister H, Hadwiger M.

IEEE Trans Vis Comput Graph. 2014 Dec;20(12):2369-78. doi: 10.1109/TVCG.2014.2346312.


Saturated Reconstruction of a Volume of Neocortex.

Kasthuri N, Hayworth KJ, Berger DR, Schalek RL, Conchello JA, Knowles-Barley S, Lee D, Vázquez-Reina A, Kaynig V, Jones TR, Roberts M, Morgan JL, Tapia JC, Seung HS, Roncal WG, Vogelstein JT, Burns R, Sussman DL, Priebe CE, Pfister H, Lichtman JW.

Cell. 2015 Jul 30;162(3):648-61. doi: 10.1016/j.cell.2015.06.054.


Clarifying Tissue Clearing.

Richardson DS, Lichtman JW.

Cell. 2015 Jul 16;162(2):246-257. doi: 10.1016/j.cell.2015.06.067. Review.


Multispectral labeling technique to map many neighboring axonal projections in the same tissue.

Tsuriel S, Gudes S, Draft RW, Binshtok AM, Lichtman JW.

Nat Methods. 2015 Jun;12(6):547-52. doi: 10.1038/nmeth.3367. Epub 2015 Apr 27.


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