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Less effective selection leads to larger genomes.

Lefébure T, Morvan C, Malard F, François C, Konecny-Dupré L, Guéguen L, Weiss-Gayet M, Seguin-Orlando A, Ermini L, Sarkissian C, Charrier NP, Eme D, Mermillod-Blondin F, Duret L, Vieira C, Orlando L, Douady CJ.

Genome Res. 2017 Jun;27(6):1016-1028. doi: 10.1101/gr.212589.116. Epub 2017 Apr 19.


No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes.

Francois CM, Duret L, Simon L, Mermillod-Blondin F, Malard F, Konecny-Dupré L, Planel R, Penel S, Douady CJ, Lefébure T.

Mol Biol Evol. 2016 Oct;33(10):2605-20. doi: 10.1093/molbev/msw131. Epub 2016 Jul 8.


Genome Content and Phylogenomics Reveal both Ancestral and Lateral Evolutionary Pathways in Plant-Pathogenic Streptomyces Species.

Huguet-Tapia JC, Lefebure T, Badger JH, Guan D, Pettis GS, Stanhope MJ, Loria R.

Appl Environ Microbiol. 2016 Jan 29;82(7):2146-55. doi: 10.1128/AEM.03504-15.


Genome based phylogeny and comparative genomic analysis of intra-mammary pathogenic Escherichia coli.

Richards VP, Lefébure T, Pavinski Bitar PD, Dogan B, Simpson KW, Schukken YH, Stanhope MJ.

PLoS One. 2015 Mar 25;10(3):e0119799. doi: 10.1371/journal.pone.0119799. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0133222.


Inflammation-associated adherent-invasive Escherichia coli are enriched in pathways for use of propanediol and iron and M-cell translocation.

Dogan B, Suzuki H, Herlekar D, Sartor RB, Campbell BJ, Roberts CL, Stewart K, Scherl EJ, Araz Y, Bitar PP, Lefébure T, Chandler B, Schukken YH, Stanhope MJ, Simpson KW.

Inflamm Bowel Dis. 2014 Nov;20(11):1919-32. doi: 10.1097/MIB.0000000000000183.


Current developments in groundwater ecology--from biodiversity to ecosystem function and services.

Griebler C, Malard F, Lefébure T.

Curr Opin Biotechnol. 2014 Jun;27:159-67. doi: 10.1016/j.copbio.2014.01.018. Epub 2014 Feb 28. Review.


Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods.

Eme D, Malard F, Konecny-Dupré L, Lefébure T, Douady CJ.

Mol Ecol. 2013 Nov;22(22):5685-99. doi: 10.1111/mec.12520. Epub 2013 Oct 28.


Microsatellite development and first population size estimates for the groundwater isopod Proasellus walteri.

Capderrey C, Kaufmann B, Jean P, Malard F, Konecny-Dupré L, Lefébure T, Douady CJ.

PLoS One. 2013 Sep 27;8(9):e76213. doi: 10.1371/journal.pone.0076213. eCollection 2013.


Phenotypic heterogeneity of genomically-diverse isolates of Streptococcus mutans.

Palmer SR, Miller JH, Abranches J, Zeng L, Lefebure T, Richards VP, Lemos JA, Stanhope MJ, Burne RA.

PLoS One. 2013 Apr 16;8(4):e61358. doi: 10.1371/journal.pone.0061358. Print 2013. Erratum in: PLoS One. 2013;8(11). doi:10.1371/annotation/ffff8cd5-b8fa-4d3c-a993-e5169198f1e6.


Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78(T.).

Lin C, den Bakker HC, Suzuki H, Lefébure T, Ponnala L, Sun Q, Stanhope MJ, Wiedmann M, Duhamel GE.

Genome Announc. 2013 Jan;1(1). pii: e00215-12. doi: 10.1128/genomeA.00215-12. Epub 2013 Feb 21.


Timetree of Aselloidea reveals species diversification dynamics in groundwater.

Morvan C, Malard F, Paradis E, Lefébure T, Konecny-Dupré L, Douady CJ.

Syst Biol. 2013 Jul;62(4):512-22. doi: 10.1093/sysbio/syt015. Epub 2013 Mar 5.


Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species.

Richards VP, Lefébure T, Pavinski Bitar PD, Stanhope MJ.

Infect Genet Evol. 2013 Mar;14:200-13. doi: 10.1016/j.meegid.2012.12.010. Epub 2012 Dec 29. Erratum in: Infect Genet Evol. 2014 Jan;21:506-7.


Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis.

Richards VP, Zadoks RN, Pavinski Bitar PD, Lefébure T, Lang P, Werner B, Tikofsky L, Moroni P, Stanhope MJ.

BMC Microbiol. 2012 Dec 18;12:293. doi: 10.1186/1471-2180-12-293.


Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans.

Cornejo OE, Lefébure T, Bitar PD, Lang P, Richards VP, Eilertson K, Do T, Beighton D, Zeng L, Ahn SJ, Burne RA, Siepel A, Bustamante CD, Stanhope MJ.

Mol Biol Evol. 2013 Apr;30(4):881-93. doi: 10.1093/molbev/mss278. Epub 2012 Dec 10.


Outcome of infection of C57BL/6 IL-10(-/-) mice with Campylobacter jejuni strains is correlated with genome content of open reading frames up- and down-regulated in vivo.

Bell JA, Jerome JP, Plovanich-Jones AE, Smith EJ, Gettings JR, Kim HY, Landgraf JR, Lefébure T, Kopper JJ, Rathinam VA, St Charles JL, Buffa BA, Brooks AP, Poe SA, Eaton KA, Stanhope MJ, Mansfield LS.

Microb Pathog. 2013 Jan;54:1-19. doi: 10.1016/j.micpath.2012.08.001. Epub 2012 Aug 31.


Progress dissecting the oral microbiome in caries and health.

Burne RA, Zeng L, Ahn SJ, Palmer SR, Liu Y, Lefebure T, Stanhope MJ, Nascimento MM.

Adv Dent Res. 2012 Sep;24(2):77-80. doi: 10.1177/0022034512449462. Review.


Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae.

Lefébure T, Richards VP, Lang P, Pavinski-Bitar P, Stanhope MJ.

PLoS One. 2012;7(5):e37607. doi: 10.1371/journal.pone.0037607. Epub 2012 May 30.


Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae.

Suzuki H, Lefébure T, Bitar PP, Stanhope MJ.

BMC Genomics. 2012 Jan 24;13:38. doi: 10.1186/1471-2164-13-38.


Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae.

Richards VP, Lang P, Bitar PD, Lefébure T, Schukken YH, Zadoks RN, Stanhope MJ.

Infect Genet Evol. 2011 Aug;11(6):1263-75. doi: 10.1016/j.meegid.2011.04.019. Epub 2011 Apr 22.


Comparative genomic analysis of the Streptococcus dysgalactiae species group: gene content, molecular adaptation, and promoter evolution.

Suzuki H, Lefébure T, Hubisz MJ, Pavinski Bitar P, Lang P, Siepel A, Stanhope MJ.

Genome Biol Evol. 2011;3:168-85. doi: 10.1093/gbe/evr006. Epub 2011 Jan 31.

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