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Items: 17

1.

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.

Saad C, Noé L, Richard H, Leclerc J, Buisine MP, Touzet H, Figeac M.

BMC Bioinformatics. 2018 Jun 11;19(1):223. doi: 10.1186/s12859-018-2215-1.

2.

Best hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds.

Noé L.

Algorithms Mol Biol. 2017 Feb 14;12:1. doi: 10.1186/s13015-017-0092-1. eCollection 2017.

3.

Smiles2Monomers: a link between chemical and biological structures for polymers.

Dufresne Y, Noé L, Leclère V, Pupin M.

J Cheminform. 2015 Dec 29;7:62. doi: 10.1186/s13321-015-0111-5. eCollection 2015.

4.

Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing.

Flissi A, Dufresne Y, Michalik J, Tonon L, Janot S, Noé L, Jacques P, Leclère V, Pupin M.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1113-8. doi: 10.1093/nar/gkv1143. Epub 2015 Nov 2.

5.

Deciphering metatranscriptomic data.

Kopylova E, Noé L, Da Silva C, Berthelot JF, Alberti A, Aury JM, Touzet H.

Methods Mol Biol. 2015;1269:279-91. doi: 10.1007/978-1-4939-2291-8_17.

PMID:
25577385
6.
7.

Improved search heuristics find 20,000 new alignments between human and mouse genomes.

Frith MC, Noé L.

Nucleic Acids Res. 2014 Apr;42(7):e59. doi: 10.1093/nar/gku104. Epub 2014 Feb 3.

8.

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.

Kopylova E, Noé L, Touzet H.

Bioinformatics. 2012 Dec 15;28(24):3211-7. doi: 10.1093/bioinformatics/bts611. Epub 2012 Oct 15.

9.

Designing Efficient Spaced Seeds for SOLiD Read Mapping.

Noé L, Gîrdea M, Kucherov G.

Adv Bioinformatics. 2010. pii: 708501. doi: 10.1155/2010/708501. Epub 2010 Sep 16.

10.

Back-translation for discovering distant protein homologies in the presence of frameshift mutations.

Girdea M, Noe L, Kucherov G.

Algorithms Mol Biol. 2010 Jan 4;5(1):6. doi: 10.1186/1748-7188-5-6.

11.

On subset seeds for protein alignment.

Roytberg M, Gambin A, Noé L, Lasota S, Furletova E, Szczurek E, Kucherov G.

IEEE/ACM Trans Comput Biol Bioinform. 2009 Jul-Sep;6(3):483-94. doi: 10.1109/TCBB.2009.4.

PMID:
19644175
12.

Optimal neighborhood indexing for protein similarity search.

Peterlongo P, Noé L, Lavenier D, Nguyen VH, Kucherov G, Giraud M.

BMC Bioinformatics. 2008 Dec 16;9:534. doi: 10.1186/1471-2105-9-534.

13.

Reconsidering the significance of genomic word frequencies.

Csurös M, Noé L, Kucherov G.

Trends Genet. 2007 Nov;23(11):543-6. Epub 2007 Oct 26.

PMID:
17964682
14.

Multiseed lossless filtration.

Kucherov G, Noé L, Roytberg M.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Jan-Mar;2(1):51-61.

PMID:
17044164
15.

A unifying framework for seed sensitivity and its application to subset seeds.

Kucherov G, Noé L, Roytberg M.

J Bioinform Comput Biol. 2006 Apr;4(2):553-69.

16.

YASS: enhancing the sensitivity of DNA similarity search.

Noé L, Kucherov G.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W540-3.

17.

Improved hit criteria for DNA local alignment.

Noé L, Kucherov G.

BMC Bioinformatics. 2004 Oct 14;5:149.

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